Gene Vapar_3938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3938 
Symbol 
ID7970367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4177859 
End bp4178554 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content66% 
IMG OID644794524 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002945818 
Protein GI239816908 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00284915 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCCGA CGACAGCAAG AACGCGCCTG ACCCGCGAGG AAAGCCGGGC GCAGACGCGC 
GAGCGCCTGG TCGAAACCGC GCAGCAGCTG TTCGTCTCGA ACGGCTATGG CGGCGCGTCG 
ATCCGCGACA TCGCGGACAA GGCGGGCTAT TCCCAAGGCG CCTTCTATTC GAACTTCTCG 
AGCAAGGAAG ACGTCCTCTT GGAGCTGCTT CGCCGGCACA TGGAGGCGGA AGCGACGCAG 
CTCTTCAAGG TGATGGGCAA CGAGCAGCAG GAGCCCGGGC AGATGCTGGC CGAGTTGGAA 
GCCTGGGCTT CCACGCTCAA TCACGATGCC GACTGGTGCA TGCTTTCCAT CGAACTTCAG 
CTGCATGCCA ACCGCAGCCG AAGCTTCGCT GCGGAATACC GGAAGGTGTG GAACAAGCAC 
CGGTCCGAGC TCGGCGGCGT GATCGGCCAG TTGTTCGGCA AGCTCGGGCG CACGCCTCCT 
GCCGCACCGG ACGAACTGGC CGCCGCCTTC ATGGCCCTGT CGCATGGGCT GGCGCTGCAG 
AGAATGAGCA CGCGCCCGGA TCCCTCGGGA CGGCTGATCA TGGTGTTCCT GCGCGGACTG 
ATCGCAGGGG CGGAAGCTCC GGGAACGGCT GCAGCCGCAC CGGCCGGCAC TCCTGCGCGC 
GCGCCAACGA AGCGCGCTCC GAAAGCCGGG CGCTGA
 
Protein sequence
MSPTTARTRL TREESRAQTR ERLVETAQQL FVSNGYGGAS IRDIADKAGY SQGAFYSNFS 
SKEDVLLELL RRHMEAEATQ LFKVMGNEQQ EPGQMLAELE AWASTLNHDA DWCMLSIELQ 
LHANRSRSFA AEYRKVWNKH RSELGGVIGQ LFGKLGRTPP AAPDELAAAF MALSHGLALQ 
RMSTRPDPSG RLIMVFLRGL IAGAEAPGTA AAAPAGTPAR APTKRAPKAG R