| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3935 |
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| Symbol | |
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| ID | 7970364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4174774 |
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| End bp | 4176267 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794521 |
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| Product | permease for cytosine/purines uracil thiamine allantoin |
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| Protein accession | YP_002945815 |
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| Protein GI | 239816905 |
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| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
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| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.461112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG TCGTCAGCCA GGCTCCCGCG GGGGCAAGCG AAGCCGGCCA TGCGCCGCAT
GCCGAATCCA ATGCGCTGAT CAAGCCCGGC TACCACCCGC GGCTGACCAA CGAAGACCTG
GCCCCGCTGC GCAAGCAGAC CTGGGGCCAA TACAACATCT TTGCGTTCTG GATGTCCGAC
GTGCACAGCG TGGGCGGCTA CATCACGGCC GGCAGCCTGT TTGCGCTGGG CCTGTCGAGC
TGGCAGGTGC TGGTGTCGCT GCTGGTGGGC ATCGTGATCG TGCAGTTCTT CTGCAACCTG
GTGGCCAAGC CGAGCCAGGT GACGGGCGTG CCCTACCCCG TGGTGTGCCG CGCGCCCTTC
GGCGTGCTGG GCGCCAACAT CCCGGCCATC ATCCGCGGGC TGATCGCGGT GGCCTGGTAC
GGCGTGCAGA CCTACCTGGC CTCGGCCGCC TTCATGGTGC TGGCGCTGCA CTTGTTCCCG
AACCTCGCGC CGTATGCCGA CGTGGCGCAG CACGGCTTCG TGGGGCTCTC GGCGCTGGGC
TGGGTGGCGT TCATGGTCAT GTGGGTGCTG CAGGCCTTCG TGTTCTGGCA CGGCATGGAA
GCGATCCGCA AGTTCATCGA CTGGGCCGGC CCGGCCGTGT ACGTGGTGAT GGCCGTGCTT
TGCGGCTGGC TGGTGTGGAA GGCCGGCTGG AGCAAGATCG ACCTGAACCT GGGCGGCATC
AAGTTCCAGG GCTGGGACGC GCTGCCGGTG ATGCTCTCGG CCATTGCGCT GGTGGTGAGC
TACTTCAGCG GCCCGATGCT CAACTTCGGC GACTTCTCGC GCTACGGCAA GAGCTTCGAT
GCGGTGAAGA AGGGCAACTT CTGGGGCCTG CCGATCAACT TCGTGTTCTT CTCGCTGCTG
ACGGTGATCA CCACCGCGGC CACGCTGCCG GTGTTCGGCG AACTCATCAC CGATCCGGTG
CACACCGTGG GCAAGATCGA CAGCACCACC GCCGTGGTGC TGGGCGCGCT GACCTTCATG
ATTGCGACCA TCGGCATCAA CATCGTCGCC AATTTCGTCT CGCCGGCCTT CGACTTTTCG
AACGTGGCGC CGCAGCACAT CAGCTGGCGC ACGGGCGGCA TGATCGCGGC GGTGGGCTCG
GTGTTCCTCA CGCCGTGGAA CCTCTACAAC AGCCCCGAGG TCATCCACTA CACGCTCGAC
GTGCTGGGCT CCTTCATCGG CCCGCTGTTC GGCATCCTGA TTGCCGACTA CTACATCGTG
CGCAAGCAGC GCATCGACGT GGACGCGCTC TACACCATGA GCCCCAAGGG CGAATACTGG
TACAGCGGCG GCTACAACCC GAAGGCGATC CAGGCGCTGG TTCCCTCCGC GCTGGTGCCG
ATCCTCTGCG TGATGGTGCC GGTGCTGCGC GGTGGCGCGA ACTATGCATG GTTCATCGGC
ATGGCACTGG GCTTCGTCAT CTACGCCCTG CTGAACCGCA GCAACAAGAC TTGA
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| Protein sequence | MSTVVSQAPA GASEAGHAPH AESNALIKPG YHPRLTNEDL APLRKQTWGQ YNIFAFWMSD
VHSVGGYITA GSLFALGLSS WQVLVSLLVG IVIVQFFCNL VAKPSQVTGV PYPVVCRAPF
GVLGANIPAI IRGLIAVAWY GVQTYLASAA FMVLALHLFP NLAPYADVAQ HGFVGLSALG
WVAFMVMWVL QAFVFWHGME AIRKFIDWAG PAVYVVMAVL CGWLVWKAGW SKIDLNLGGI
KFQGWDALPV MLSAIALVVS YFSGPMLNFG DFSRYGKSFD AVKKGNFWGL PINFVFFSLL
TVITTAATLP VFGELITDPV HTVGKIDSTT AVVLGALTFM IATIGINIVA NFVSPAFDFS
NVAPQHISWR TGGMIAAVGS VFLTPWNLYN SPEVIHYTLD VLGSFIGPLF GILIADYYIV
RKQRIDVDAL YTMSPKGEYW YSGGYNPKAI QALVPSALVP ILCVMVPVLR GGANYAWFIG
MALGFVIYAL LNRSNKT
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