| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3925 |
|---|
| Symbol | |
|---|
| ID | 7970354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4164713 |
|---|
| End bp | 4165063 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794511 |
|---|
| Product | hydroxyisourate hydrolase |
|---|
| Protein accession | YP_002945805 |
|---|
| Protein GI | 239816895 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2351] Transthyretin-like protein |
|---|
| TIGRFAM ID | [TIGR02962] hydroxyisourate hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.365607 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTTGA GCACTCACGT ACTGGACACG ATGCACGGCG GCCCCGCGGC CGGCATGGAG
GTGGCGCTGT ACACCACCCA AGGCGACGAC GCCACGCTGG TGAAGCGCTT CACGCTGAAT
TCGGACGGCC GCAGCGACGG GCCGCTCTAC GACAACCACT CGCTCAAGGC CGGCACCTAC
CGGCTGGTGT TCGACGTGGC GGGCTACTTC AAGGCGCGCG GCGTGAAGCT GCCCGAGCCG
AACTTCCTCA ACAAGGTGTC GCTGGACTTC GGTGTGGCGC ACACCGACCA GCACTACCAC
GTGCCGCTGC TCGTGAGCCC GTGGAGCTAC TCGACCTACC GCGGGTCCTG A
|
|---|
| Protein sequence | MGLSTHVLDT MHGGPAAGME VALYTTQGDD ATLVKRFTLN SDGRSDGPLY DNHSLKAGTY
RLVFDVAGYF KARGVKLPEP NFLNKVSLDF GVAHTDQHYH VPLLVSPWSY STYRGS
|
|---|
| |