| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3922 |
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| Symbol | |
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| ID | 7970351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4161907 |
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| End bp | 4163112 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794508 |
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| Product | protein of unknown function DUF989 |
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| Protein accession | YP_002945802 |
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| Protein GI | 239816892 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3748] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.222073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAGCT ATTACCTCGA CTGGGCCAAC CTGCTGCTGC GCTGGGTCCA CGTCATCACC
GCCATCGCCT GGATCGGCGC CTCCTTCTAC TTCGTGATGC TGGACAACAG CCTCGAGAAG
CCGCAAGACC CCGAGTCGCT CGACAAGGGC GTGGGCGGCG AGCAATGGGC CGTGCACGGC
GGCGGCTTCT ACAACATGCA GAAGTACGCG CTGGCGCCCA AGCGGCTGCC GGACCACCTG
CACTGGTCGT ACTGGGAGAG CTACAGCACC TGGCTCACGG GCTTTGCGCT CTTCACCATG
TCGTACCTGT GGAACGCCAG CACCTACCTG ATCGACAAGT CGAAGATGGA CTGGCAGCCG
GGCGCCGCCA TTGGCGTGGC GCTGGCTTTC TTCGTGGTGT TCTGGATGGT CTACGACGGC
ATCTGCCAGA TCTTCGGCCG CCGCAAGAAC GGCGACACCA TCGTGGGCGT GCTGATCGCG
CTCTTCATCG TGTTTGCGAC CTGGCTGGCC TGCCAGTGGT TCGCGGGCCG TGCGGCCTTC
TTGCTGGTGG GCGCGATGAT GGCCACCACG ATGAGCGGCA ACGTGTTCTT CTGGATCATT
CCGGGCCAGC GCAAGAACGT GCAGGCCCTG CGCGAAGGCC GGCCGGTCGA TCCGGTGCAC
GGCCAGCGCG GCAAGCAGCG CAGCGTGCAC AACACCTACT TCACGCTGCC GGTGCTGTTC
GCGATGCTGA GCAACCACTA CAGCTTCACC TACACGCACA AGTACAACTG GATCGTGCTG
CTGCTGATCA TGCTCGGCGG CGCGGCCATT CGCCAGTTCT TCGTGGTGCG GCACCGCTTC
AAGCTCGGCA ACGCGGGCAA CCCGCTGCCC TATGCGCTGA TCGGCATCGT GGTGCTGGGG
CTCACCATCG TCTGGATGAA GCCCGAGCCG GCGGCCGCGC CTGTGGCTGC GGCAGCAGCG
CCCGCGGTGG CATTCAAGGA CGTGCAGAAG GTGCTCGAGC AGCGCTGCTT CATGTGCCAT
GGCGAGGCCG TGCAGATGAA GAACGTGCGC GTCGATTCGC CCGAGCAGGT GGCGGCGCAT
GCGCAGGCCA TCTACCAGCA GGTGGTGGTC ACGAAGATCA TGCCGATGAA CAACGCCACC
GGCATCACCG ACGAAGAACG CGCGCTGATC GGCCGCTGGT TCCAGGCCGG CGCCAAGACC
AACTAG
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| Protein sequence | MESYYLDWAN LLLRWVHVIT AIAWIGASFY FVMLDNSLEK PQDPESLDKG VGGEQWAVHG
GGFYNMQKYA LAPKRLPDHL HWSYWESYST WLTGFALFTM SYLWNASTYL IDKSKMDWQP
GAAIGVALAF FVVFWMVYDG ICQIFGRRKN GDTIVGVLIA LFIVFATWLA CQWFAGRAAF
LLVGAMMATT MSGNVFFWII PGQRKNVQAL REGRPVDPVH GQRGKQRSVH NTYFTLPVLF
AMLSNHYSFT YTHKYNWIVL LLIMLGGAAI RQFFVVRHRF KLGNAGNPLP YALIGIVVLG
LTIVWMKPEP AAAPVAAAAA PAVAFKDVQK VLEQRCFMCH GEAVQMKNVR VDSPEQVAAH
AQAIYQQVVV TKIMPMNNAT GITDEERALI GRWFQAGAKT N
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