| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3919 |
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| Symbol | |
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| ID | 7970348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4155759 |
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| End bp | 4158491 |
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| Gene Length | 2733 bp |
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| Protein Length | 910 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794505 |
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| Product | magnesium-translocating P-type ATPase |
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| Protein accession | YP_002945799 |
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| Protein GI | 239816889 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01524] magnesium-translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.346566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACG TCCTGAAGTC CCTTTTCGAG AGCTTCCTGC GCAGCCGCCG CATGCTGCAT
CACTTCGAGC GCTGGCAGGC ACTGCTGGGC CCGAAGCCCG CGGGCACCGC CTCGGCGGCC
ATGCCGCCCG GCATCGCCCA GGCACTGTCC GCCGCATCGC GCGCCGATGC CGCCGCACTG
CTCGCAAGCC TCCACAGTTC GCCGCAAGGC ATGGCCGAAG ACGAGGCCCT GGCGCTGCGC
AGGCAGTTCG GCGGCAACGA GGTGCGCCAC GAGCAGCCGC TGCCGTGGTG GACGCACCTG
TGGCAGTGCT ACCGCAATCC GTTCAACCTG CTGCTGACCG TGCTGGCGCT GGTCTCCTAC
GTGACCGAGG ACATGAAGGC CGCGCTCGTG ATCGGCAGCA TGGTGGTGCT GTCGACGGTG
CTGCGCTTCC TGCAGGAATC GCGCTCCGGC AAGGCCGCCG AGCGGCTCAA GGCGATGGTG
AGCAACACCG CCACCGTGCT GCGGCCCGCG CCCGGCGCTG CGGGCGCGCT GCGCATCGAA
GTGCCGATGC GCGACCTGGT GCCGGGCGAC GTGATCGCAC TCTCGGCCGG CGACATGATC
CCGGCCGACT GCCGGCTGCT CGCGGCCAAG GACCTGTTCA TCAGCCAGTC GGCGCTGACC
GGCGAAGCGA TGCCCGTGGA GAAGTTCTGC ATCGACCGCG GCAGCCATGA AGCCGGCGTG
CTCGAGCGCG ACAACCTGCT CTTCATGGGC ACCAGCGTGG TCAGCGGCAC CGCCTCCGCG
CTCATCGTGC ACACGGGCAA CCGCACCTTC TTCGGCGCGC TGGCGCAGCG CGTGACCGCC
GCCGACCAGG GCACCAGCGC GTTCCAGGCC GGCATCAACC GCGTGAGCTG GGTGCTGATC
CGCTTCATGC TGGTGATGGC GCCGCTGGTG CTGGTGATCA ACGGCCTGGC CAAGGGCGAC
TGGTGGGAGG CGGCGCTGTT CGCGCTGTCG ATCGCGGTGG GCCTCACGCC CGAGATGCTG
CCGATGATCG TGACCGCTGC GCTGGCCAAG GGCGCGGTCG TGATGTCGCG GCAGAAGGTG
ATCGTGAAGC GGCTCGAAGC GATCCACAAC TTCGGCGCCA TGGACGTGCT GTGCACCGAC
AAGACCGGCA CGCTGACGCA GGACCGCATC GTGCTGGAGC GCCACACCAA CGCCTGGGGC
GAGGCCTCGG ACCACGTGCT GCAGATGGCC TACCTGAACA GCTTCCACCA GACCGGCCTG
AAGAACCTGC TCGACAAGGC GGTGCTGAAC CATGCCGAGG TGCGGCTGGA AACGCGGCTG
CAGACGGCCT GGCGCAAGAT CGACGAAGTG CCCTTCGACT TCGCGCGCCG GCGCATGTCG
GTGGTGGTCG AGAACGGCGG CAGCGAGCAC CTGCTGGTCT GCAAGGGCGC ACTGGAAGAG
ATCCTCTCGG TCTGCAGCTC GGTCGAGCGC GGCGACGAGG TGCTGCCGCT CGACGCCGGC
CTGCTCGCAC GCATCCACGC CATTGCGTCG GAGCTCAACA CCCAGGGCCT GCGCGTGGTG
GCCGTGGCCA GCCGCGTGCT GGCCGCCGGG ACGCAACGGC AGGCCCAGGT GGCCTATGGC
GTGGCCGACG AAACGGCGCT CACGCTGCTG GGCTATGTCG CGTTTCTCGA TCCGCCGAAG
GAGTCGACCG CACCCGCGCT GCGCGCGCTG GCCGAGCACG GCGTGGCCGT GAAGGTGCTG
ACGGGCGACA ACGAGCTGGT GGCGCGCAAG GTCTGCGGCG ACGTGGGCAT CGAGGTTGGC
CGGGTCGTGC CGGGCCGCGA GATCGAAGAG TTGGACGACG CCGGCCTGCG CGCGCTGGTC
GAGCGGCACC AGGTGTTCGC CAAGCTCACG CCCGCGCACA AGGAGCGCAT CGTGCGTGCG
CTGCATGCGA ACGGGCACGT GGTGGGCTTC ATGGGCGACG GCATCAACGA TGCGCCCGCG
CTGCGTGCGG CCGACATCGG CATCTCGGTG GACGGCGCGG TCGACGTGGC CAAGGAATCG
GCCGACATCA TCCTGCTCGA GAAGAGCCTG ATGGTGCTGG AGCAGGGCGT GGTGGAAGGC
CGCCGCACCT TTGCCAACAT GCTGAAGTAC ATCAAGCTGA CGGCGAGCTC GAATTTCGGC
AACGTGTTCT CGGTGCTGGT GGCGAGCGCG TTCCTCCCCT TCCTGCCGAT GCTGCCGCTG
CATCTGCTGG TGCAGAACCT GCTGTACGAC GTGTCGCAGA TCGCGATTCC ATTCGACAAC
GTCGACGCTG AGTTCCTGCG TAAGCCACAG AGCTGGAACC CGGCCGACCT GGGCCGCTTC
ATGCTGTTCT TCGGGCCGCT GAGCTCGGTG TTCGACATCC TGACCTACGC CGTGATGTGG
TTCGCGTTCT CGGCCAACAC GGTGGCGCAC CAGGCGCTGT TCCAGTCGGG CTGGTTCATC
GAAGGCCTGT TGTCGCAGAC GCTGGTCGTG CACCTGATCC GCACGCGCAA GATCCCGTTC
CTGCAAAGCC GCGCGGCCTG GCCGCTGCTG GCGATGGGCG CGGCGATTGC GGCGGCGGGC
ATCTGGCTGC CGATGGGGCG GCTCGCTCAC TACTTCAGGC TGCAGGCGCT TCCGCTGGCC
TACTTTCCGT GGCTCGCAGC GATGCTGGCG GGGTATGCGG CGCTCACGCA GGCGGTCAAA
GGGTGGTATG CGCGGCGGTT TGGGTGGCAG TGA
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| Protein sequence | MKNVLKSLFE SFLRSRRMLH HFERWQALLG PKPAGTASAA MPPGIAQALS AASRADAAAL
LASLHSSPQG MAEDEALALR RQFGGNEVRH EQPLPWWTHL WQCYRNPFNL LLTVLALVSY
VTEDMKAALV IGSMVVLSTV LRFLQESRSG KAAERLKAMV SNTATVLRPA PGAAGALRIE
VPMRDLVPGD VIALSAGDMI PADCRLLAAK DLFISQSALT GEAMPVEKFC IDRGSHEAGV
LERDNLLFMG TSVVSGTASA LIVHTGNRTF FGALAQRVTA ADQGTSAFQA GINRVSWVLI
RFMLVMAPLV LVINGLAKGD WWEAALFALS IAVGLTPEML PMIVTAALAK GAVVMSRQKV
IVKRLEAIHN FGAMDVLCTD KTGTLTQDRI VLERHTNAWG EASDHVLQMA YLNSFHQTGL
KNLLDKAVLN HAEVRLETRL QTAWRKIDEV PFDFARRRMS VVVENGGSEH LLVCKGALEE
ILSVCSSVER GDEVLPLDAG LLARIHAIAS ELNTQGLRVV AVASRVLAAG TQRQAQVAYG
VADETALTLL GYVAFLDPPK ESTAPALRAL AEHGVAVKVL TGDNELVARK VCGDVGIEVG
RVVPGREIEE LDDAGLRALV ERHQVFAKLT PAHKERIVRA LHANGHVVGF MGDGINDAPA
LRAADIGISV DGAVDVAKES ADIILLEKSL MVLEQGVVEG RRTFANMLKY IKLTASSNFG
NVFSVLVASA FLPFLPMLPL HLLVQNLLYD VSQIAIPFDN VDAEFLRKPQ SWNPADLGRF
MLFFGPLSSV FDILTYAVMW FAFSANTVAH QALFQSGWFI EGLLSQTLVV HLIRTRKIPF
LQSRAAWPLL AMGAAIAAAG IWLPMGRLAH YFRLQALPLA YFPWLAAMLA GYAALTQAVK
GWYARRFGWQ
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