| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3915 |
|---|
| Symbol | |
|---|
| ID | 7970344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4153047 |
|---|
| End bp | 4154348 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644794501 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_002945795 |
|---|
| Protein GI | 239816885 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG ATGCAGTTGC GATTCTTGGC TTCGTGGTCC TCTTCGCGCT GATGCTCTTG
CGGGTGCCGG TGGGCATGGC GATGGGCCTC GTGGGCGTGG CGGGCTACAG CTACCTCGTG
GGCCCCGGGC CCGCGCTCAA GCTGGTCGGC CAGACCTCCA TGCGCACCGT GACCGACTAC
ACCTTCGGCG TGATCCCGAT GTTCATGCTG ATGGGCGCGC TGGTGTCGGT GTCGGGCGTG
AGCCGCGAAC TCTTCAAGGC CGCCAACTCG ATGATCGGCC ACATGCGCGG CGGGCTCGGC
GTGGCCACCG TGGTGGCCTG CGGCGGCTTC GCGGCGATCT GCGGCTCCTC GGTGGCCACG
GCCGCCACCT TCTCGGCGGT GGCCTATCCG GAGATGCGGC GCTTCAACTA CCCGCAGTCG
TTCTCCACCG GCGTGATCGC CGCGGGCGGC ACGCTGGGCG CCATTCTTCC GCCTTCGACG
GTGCTCGCGG TCTACGCCAT CCTCACGCAG CAGGACATCG GCAAGCTCTT CATGGCCGGC
ATCGTGCCCG GCATCCTGGC CATGGCGATG TACGTGCTGA CCATCGCGAT CATCGTGAAG
GCGCGGCCCG GCTGGCTGCC CGGCGGCGAG GTCAAGCCGT GGTCGGAACG CCTCAATGAC
CTGAAGAACG TGTGGGCGCC GCTGGTGCTG TTCGTGTTCG TGATCGGCGG GCTCTACGGC
GGCTTCTTCA CGCCCACCGA GGCCGGCGGC GTGGGCGCGA GCGGCGCCTT CATCCTCGGG
CTGCTGCGGC GCAAGCTCGA CGGCCCGAAG ATCCGCGAGG CGCTGCTGTC GGCCACGCGC
ACGGCGGCGG CGGTGTTCAC GGTGCTGATC GGCGCGCTGC TCTTTGGCTA CTTCCTCACC
ATCACGCAGA GCCCGCAGAA GCTCACGGAA TTCCTCACCG GCCTGGGCAT CGGCCGCTAC
GGCGTGCTTG CACTCATCAT GCTGATGTAC CTGGTGCTCG GCTGCCTGAT GGACGCGATG
GCCATGATCA TCCTCACGGT GCCGATCATC TTTCCGGTGA TCGTGCACCT GGGCTTCGAT
CCGATCTGGT TCGGCGTGAT CATCGTGATG ACGGTGGAAC TGGGGCTGAT CCATCCGCCG
GTGGGGATGA ACGTGTTCGT GATCAAGAGC GTGGTGAAGG ACGTGAGCTT CACCACCATC
TTCAAGGGCG TGCTGCCGTT CATCGTGACG GACATCGTGC GCCTGGTGAT CCTGATCGCG
TTTCCCATCA TCGCCTTGTG GCTGCCGACG AGAATGAACT GA
|
|---|
| Protein sequence | MSPDAVAILG FVVLFALMLL RVPVGMAMGL VGVAGYSYLV GPGPALKLVG QTSMRTVTDY
TFGVIPMFML MGALVSVSGV SRELFKAANS MIGHMRGGLG VATVVACGGF AAICGSSVAT
AATFSAVAYP EMRRFNYPQS FSTGVIAAGG TLGAILPPST VLAVYAILTQ QDIGKLFMAG
IVPGILAMAM YVLTIAIIVK ARPGWLPGGE VKPWSERLND LKNVWAPLVL FVFVIGGLYG
GFFTPTEAGG VGASGAFILG LLRRKLDGPK IREALLSATR TAAAVFTVLI GALLFGYFLT
ITQSPQKLTE FLTGLGIGRY GVLALIMLMY LVLGCLMDAM AMIILTVPII FPVIVHLGFD
PIWFGVIIVM TVELGLIHPP VGMNVFVIKS VVKDVSFTTI FKGVLPFIVT DIVRLVILIA
FPIIALWLPT RMN
|
|---|
| |