| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3913 |
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| Symbol | |
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| ID | 7970342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4151467 |
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| End bp | 4152522 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794499 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002945793 |
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| Protein GI | 239816883 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCC ACCGCCACCC CCATCATCCG AAGCGCCCCG CTGCGCCGGC CCTGATCGCC
ATCTGCGCCG CCCTTGCACT CGGCACGCCC GCCGTGCAGG CGCAGGACAA GGCCGTGCAG
ATCAAGCTCT CGAGCTGGGT GCCCGCGCAG CATCCGCTCA ACCCCGCGCT GCAGGCCTGG
GCCGACGACA TCAAGAAGGC GTCGAACGGC AGCATCACCG CGATCCTGTT TCCATCGGAG
CAGCTCGGCA AGGCCTTCGA CCACTACGAC ATGGCGCGCG ACGGCATCGC CGACTTCGCC
TACGTGAACC CCGGCTACCA GCCCGGCCGC TTTCCGGTGA TGGCGGGTGC GTCGCTGCCC
TTCCTGTTCG CCAACGGCAA GGAGGGCTCG GCCGCCATCG ACGCCTGGTA CCGCAACTAC
GCGGCCAAGG AAATGAAGGA CGTGAAGTAC TGCTTCGCGT TCGTGCACGA CCCCGGCACC
TTCCACTCGC GCAAGAAGAT CACGCTGCCC ACCGACATCA AGGGCATGAA GGTGCGGCCC
GCCACCAGCA CCGTGGGCCA GCTGATCACC TCGCTGGGCG GCACCAACGT GCAGGCCTCG
GCGCCCGAGT CGCGCGACAT GCTGGAGCGC GGCGTGGCCG ATGCCATCAC CTTCCCCTGG
GGATCGATCG GCCTGTTCGG CATCGACAAG GTGGTCAAGT ACCACATGGA CGCGCCGCTC
TACGTCACGC CCTTCGTCTG GGTGATGAAC AAGGGCAAGT ACGACGCCAT GTCCGCCGGC
CAGAAGAAGG TGATCGACGA GCACTGCACC AGCGAGTGGG CCCAGAAGGT GGCCGGGCCG
TGGGCCGACT TCGAGTTCGG CGGGCGCGCG AAGATCGCCG CGCAGCCGGG CCACGAGGTC
TACAAGCTCA CGCCGGAGCA GCTCGATGCC TGGCGCAAGG CCGCAGCGCC TTCCGAGGCG
CAGTGGGCCG ACACCGTGAA GAAGGCGGGC GAGGATCCAA AGGCCGTGAT GGATGCGCTC
AAGGCCAGCC TCGCCAAGTA CAAGTCGGCG CTCTGA
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| Protein sequence | MKTHRHPHHP KRPAAPALIA ICAALALGTP AVQAQDKAVQ IKLSSWVPAQ HPLNPALQAW
ADDIKKASNG SITAILFPSE QLGKAFDHYD MARDGIADFA YVNPGYQPGR FPVMAGASLP
FLFANGKEGS AAIDAWYRNY AAKEMKDVKY CFAFVHDPGT FHSRKKITLP TDIKGMKVRP
ATSTVGQLIT SLGGTNVQAS APESRDMLER GVADAITFPW GSIGLFGIDK VVKYHMDAPL
YVTPFVWVMN KGKYDAMSAG QKKVIDEHCT SEWAQKVAGP WADFEFGGRA KIAAQPGHEV
YKLTPEQLDA WRKAAAPSEA QWADTVKKAG EDPKAVMDAL KASLAKYKSA L
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