| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3907 |
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| Symbol | |
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| ID | 7970336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4142251 |
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| End bp | 4143879 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794493 |
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| Product | xanthine dehydrogenase, small subunit |
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| Protein accession | YP_002945787 |
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| Protein GI | 239816877 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
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| TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG AGAGCAGCAG CAGCAACAAC AACAGCACGC AACCCGTCCG CTTCTTCCAC
CGCGGCAGGA TCGTCGACGT CAGCGGCGTC CATCCGACCC GTTCGGTGCT CGACTGGCTG
CGCGAGGACG CGCACTGCAC CGGCACCAAG GAAGGCTGCA ACGAGGGCGA CTGCGGCGCC
TGCACCGTGG TGATCGGCGA GCTGGCCAGC GACGCCAACG CGCCGGGCAC GGTCGGCGGG
CTGCAGCTGC AGACGGTCAA CGCCTGCATC CAGTTCCTGC CCACGCTGCA CGGCAAGGCG
CTGTTCACGG TCGAAGACCT GAAGGCGCAG TGCGCGGCGG CCCAGCCGCA GGACAGCGGC
AAGAAGCACG CCGTCCACAC GCTGCACCCG GTGCAGCAGG CGATGGTCGA CTGCCATGGC
TCGCAGTGCG GCTTCTGCAC GCCGGGCTTC GTGATGTCGC TGTGGTCCGC CTACGAGCAC
CACCAGGCCG AGGGCACGCA GCCCACGCGG CAGCAGCTGG CCGACGAGCT CTCGGGCAAT
CTCTGCCGCT GCACCGGCTA CCGGCCGATC CTCGATGCCG GGCAGCGCAT GTTCGATCTG
CCGGCCGTGC GGCTCGACAC GAAGCCCGTG GTGGCGGCGC TCACCGCCTT GCAGAGCGAG
GGCCTGGACT ACGCCGCGCC GCTCGGCGCC CGCATCGACC ACTTCCACGC GCCGCGGACA
CTGGCACAGC TCGCCGCGCT GCGCGAACAG AAGCCGGGCG CCCAGCTGCT GGCCGGCTCG
ACCGACGTCG GCCTCTGGGT CAACAAGCAG TTCCGCGACC TTGGCGACAT CATCTACGTG
GGCGACGTGG CCGAGATGAA GACCATCGAG ACCCGGCAGA ACGGCCAAGG CGGCGAGCTC
TACATCGGCG CGGGCGCCTC GCTCGAAGCC GCCTTCGAAG CCCTGGTGCA GCGCGTGCCG
AGTCTCGCGG ACGTGTGGCT GCGCTTTGCC TCTCCTCCCA TCCGCCATGC CGGCACCATG
GGCGGCAACG TGGCCAACGG CTCGCCCATC GGCGATTCGC CGCCGGTGCT GATGTCGCTC
GATGCCGAGA TCGAGCTGCG CCGCGGCGAC GCGGTGCGCC GCATGCCGCT GCCTGACTTC
TATATCGACT ACATGAAGAA CCAGCTGCAG CCCGGCGAGT TCGTGCAGGG GCTCGCGGTG
CCGCTGGCCG CCATGCGCCG CCAGGTGCGC GCCTACAAGA TCAGCAAGCG CTTCGACTGC
GACATCTCGG CCCTGTGCGC AGGCTTCGCG ATCGAGCTCG AAGAGGGCAG CGACACGGTA
AAGGCCGTGC GCCTGGCCTT CGGCGGCATG GCCGCCACGG TGAAGCGCGC CGCCAATGCC
GAAGCGGCAC TCGTCGGCAA GCCGTGGACC CAGGCCAGCG TCGCCGCCGC CAAGCTCGCG
CTCGCGCAGG ACTTCAAGCC GCTGTCGGAC ATGCGCGCCT CGGCCGACTA CCGGCTGCAG
GTGGCGCAGA ACCTCGTCCA GCGCCTCTGG CTCGAAACGC GCACCGAAGA CGCGCTGTCG
CTCGAAGAGA CCAGTGTCTG GAGCGTGATG CCCCATGCCG TCGTCAAAGC CGCGGCCGAA
GGAGCCTGA
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| Protein sequence | MSTESSSSNN NSTQPVRFFH RGRIVDVSGV HPTRSVLDWL REDAHCTGTK EGCNEGDCGA
CTVVIGELAS DANAPGTVGG LQLQTVNACI QFLPTLHGKA LFTVEDLKAQ CAAAQPQDSG
KKHAVHTLHP VQQAMVDCHG SQCGFCTPGF VMSLWSAYEH HQAEGTQPTR QQLADELSGN
LCRCTGYRPI LDAGQRMFDL PAVRLDTKPV VAALTALQSE GLDYAAPLGA RIDHFHAPRT
LAQLAALREQ KPGAQLLAGS TDVGLWVNKQ FRDLGDIIYV GDVAEMKTIE TRQNGQGGEL
YIGAGASLEA AFEALVQRVP SLADVWLRFA SPPIRHAGTM GGNVANGSPI GDSPPVLMSL
DAEIELRRGD AVRRMPLPDF YIDYMKNQLQ PGEFVQGLAV PLAAMRRQVR AYKISKRFDC
DISALCAGFA IELEEGSDTV KAVRLAFGGM AATVKRAANA EAALVGKPWT QASVAAAKLA
LAQDFKPLSD MRASADYRLQ VAQNLVQRLW LETRTEDALS LEETSVWSVM PHAVVKAAAE
GA
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