Gene Vapar_3898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3898 
Symbol 
ID7970327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4130232 
End bp4131104 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content71% 
IMG OID644794484 
ProductCitrate (pro-3S)-lyase 
Protein accessionYP_002945778 
Protein GI239816868 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.107361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAGCA AACTCTTCGT TCCCGGCACG CGCCCCGAGC TGTTCGCCAA GGCGCTGGCC 
AGCGCGGCGG ACAGCGTCTG TTTCGACCTG GAAGACGCGG TGTCCGAGCC GCGCAAGGGC
GAGGCGCGCG ACGCCGTGCG GCAGCTGCTG CTGCAGGGCG GCGGCACGGC CGCGTCGGGC
AAGACCGTGA TCGTTCGCGT CAACGCGATG GACACGCCGC ATTTCGCGGA GGACGTTGTG
GCCGTGGCGC AGCCCGGCGT GCACCTGATC AACATCCCGA AGCCCGAGAG CGCGGCCCAT
GTGCGCAGCG CGGTCGAGGC GATCGAACGC GCCGAGCGCA CCAACGGCGT GGGCACGCCG
ATCGGCCTGC TGCTGAACAT CGAGGCACCC GCGGCCTTGC GCACCGCCGC CGAGCTTGCG
CTCGCGCATC CGCGCGTGGC GGGCCTGCAA CTGGGCCTGG GCGACCTGTT CGAGCCGCTG
GGCATTGCGC GGCGCGAGCC GGCTGCGATC CAGCAGGCGA TGTTCGCGGT GCGCATGGCC
GCGGGCGAGG CGGGCGTCTA TGCCTACGAC GGCGCGTTCG CGGACATCCG CGACGCCGAC
GGATTCCGCG CCGAAGCCAT GCTCGCGCGC AACCTCGGCT TCCTCGGCAA GACCTGCATC
CACCCGAGCC AGATCGCGAT CGCCAACGAG GTGTTCCGTC CCACCGACGA GGAGATCGCG
CACGCATGCA AGGTGGTCGA GGCCGCCCGC ACGGCCGATG CCGGCGGCGT GGGCGCCTAT
GTGGTGGACG GAAAGATGAT CGACATGCCT TTCGTGATCC GCGCGCGCGC CATCGTTGCG
AGCGCGCGCA GCCTCGGCCT GCTGCCGGGC TGA
 
Protein sequence
MRSKLFVPGT RPELFAKALA SAADSVCFDL EDAVSEPRKG EARDAVRQLL LQGGGTAASG 
KTVIVRVNAM DTPHFAEDVV AVAQPGVHLI NIPKPESAAH VRSAVEAIER AERTNGVGTP
IGLLLNIEAP AALRTAAELA LAHPRVAGLQ LGLGDLFEPL GIARREPAAI QQAMFAVRMA
AGEAGVYAYD GAFADIRDAD GFRAEAMLAR NLGFLGKTCI HPSQIAIANE VFRPTDEEIA
HACKVVEAAR TADAGGVGAY VVDGKMIDMP FVIRARAIVA SARSLGLLPG