| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3896 |
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| Symbol | |
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| ID | 7970325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4127988 |
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| End bp | 4129181 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794482 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_002945776 |
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| Protein GI | 239816866 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00515668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTCG ACACCCCGAA CGACGACGCA CGCCTGCCCG CACGCAGCGG CCCCACCGGC
CCGCTCAGCG GCCTGCGCGT GCTCGACCTC AGTGCCTACA TCGCGGGCCC GTACGGCTGC
TCGCTGCTGG CGGACCAGGG GGCCGAAGTC ATCAAGATCG AGCCGCCCAC GGGCGACAAC
CTGCGCAAGT ACCCGTCGAC GCTCGAAGCC GAGAGCCGCG CCTTCATCGG CGTGAACCGC
AGCAAGCTCG GCGTGGTGCT CGACCTGAAG AAGGCCGACG GCCTTGCCGC GCTGATGGCG
CTGGTGCGCA CGGCCGATGT GCTGGTGCAC AACTTCAGGC CCAGCGTGCC GCCGCGGCTG
GGCATCGCCT ATGAACAGCT GAAGGAGATC AATCCGCGCC TGATCTATTG CAGCCTCACG
GGCTATGGCG AAACCGGTCC GCTGCGCGAG AAGGCGGGCT ACGACCAGGT GCTGCAGACC
ATGACCGGCA TGTGCGCGCT GCAGGGCAAG CGCGGCGAGC CGCCCGAGAT CATCTATGGC
TCGGTGGTCG ACTATTACGC GGCCGCGCTG GTGGCCGCGG GCGTGGCCTC GGCGCTGTAC
GAGCGCGAGA AAAGCGGCCA GGGCCAGTTC GTCGGCGTGT CGCTGCTGCG CTCCGCGCTC
ACGATGCAGT CGGCGCGCAT GGTGTGGGCC GAGGGCGAGC CCAAGGACGT GGGGCGCGAC
ATGCGCTCGG GCGGCATCAC CGGCATCCAT CCGACGCGCG AGGGGCATCT CTACATCTCG
GCCAACACGC CGCATTTCTG GCGCGCGCTG TGCGACAAGG TGGGCCTGTC CGAACTCGCG
GCCGACGAGC GCTACGACTC GGTGCGCAAG CGCGCGCAGC ATTTTGCCGA GATCGTTCCG
CTGCTGCGCG AGGCGCTGGC CGCACGCAGC GCGCTCGAGT GGGAGGAACT GTTCGGCGAG
GAGGTGCCCT GCGCCGCAGC GCGCACGGTC GAGGACATGT TCGACAACGA GCAGGTGCTG
GCCGAGGACA TGGTGGCGAC CTTCGCGCAT CCCACGCTCG GCTCCTACCG CGGCTTCACG
CGGCCGGTGC AGTTCGGCCG CACGCCCGGC CCGGAGCCCT TTGCGGCGCC CACGCTGGGG
CAGCACACGC AGGCGGTGCT GGCGGCGCGC AAGGCCGCGG ACGCGGCCGG CTGA
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| Protein sequence | MSFDTPNDDA RLPARSGPTG PLSGLRVLDL SAYIAGPYGC SLLADQGAEV IKIEPPTGDN
LRKYPSTLEA ESRAFIGVNR SKLGVVLDLK KADGLAALMA LVRTADVLVH NFRPSVPPRL
GIAYEQLKEI NPRLIYCSLT GYGETGPLRE KAGYDQVLQT MTGMCALQGK RGEPPEIIYG
SVVDYYAAAL VAAGVASALY EREKSGQGQF VGVSLLRSAL TMQSARMVWA EGEPKDVGRD
MRSGGITGIH PTREGHLYIS ANTPHFWRAL CDKVGLSELA ADERYDSVRK RAQHFAEIVP
LLREALAARS ALEWEELFGE EVPCAAARTV EDMFDNEQVL AEDMVATFAH PTLGSYRGFT
RPVQFGRTPG PEPFAAPTLG QHTQAVLAAR KAADAAG
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