Gene Vapar_3892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3892 
Symbol 
ID7970321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4123894 
End bp4124892 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content73% 
IMG OID644794478 
Producttranscriptional regulator, AraC family 
Protein accessionYP_002945772 
Protein GI239816862 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.186679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCACCC TGACCCGCAA GGACGAAGAA ACCGCGGTTT CTGCCAGCGA CGTGGTGCTG 
GTGGTGTTCG ACGGCGTTGA GGTGATCGAC GTCGCCGGCC CGGCCAGCGT GTTCAGCAAG
GCCGAGCAGA TGCATCCCGG CAGCTACCGC CTGCACATCG CATCGCCGGC CGGCGGCACC
GTGTCGACGA ACGGCGGCCT GAGCTTTTCG GGCACCAGCA GCCTGCAGCA GCTGCCCGCG
TCGATCGACA CGCTGATCGT CGCCGGCGGC GACGAGCCGG CGGTGCGCGC GGCCATCCTC
GAGCAGCGCA TCGGTGCCTG GCTACGCCAA GTGGCGCCGC GCACGCGCCG CATGGCGAGC
GTGTGCAGCG GCGCCTTCGC GCTGGCCGCG GCGGGCCTGC TCGACGGCCG CGAGGCCACC
ACGCACTGGC GCGTGTGCGA CCAGCTGCAG GCGCTGCGGC CGCAGGTGCG GGTGCAGCGC
GAGCGCATCT ACGTGCACGA CGGGCCGGTG TGGACCTCGG CCGGCGTCAC CACCGGCATC
GAGCTTGCGC TTGCGCTGGT CGAGGACGAC CTCGGCCATG CCGTGTCGAT GGAAATCGCC
CGCACGCTGG CGCTGCCGAT GCTGCGCGGC GGGGCGCAGC CGCAGCTGAC GCAGGCGCTC
CAGGCGCAGG CCTCGGCCAG CCACCGCCTG CGCGAACTGG TGGCGTGGAT CGGCACGCAT
CCGCAGGACG ACCTGTCGGT CGAGGCCCTG GCCGAGCGCG TGCAGATGAG CCCGAGAAAC
TTCGCGCGCG CCTTCGCGGC CGAGACCGGC TGCACGCCGG CGCGCTTTGT CGAACAGGTC
CGCGTGGCCG CCGCCGCGCA GCTGCTGCGC CAGACGCGGT GGCCGCAGGA CCGCATCGCG
AGCCGCAGCG GCTTCCGCTC GGTGGACGCG CTGCAGCGCG CCTTCGCGCG GCAGCACGGC
CTGACGCCGC AAGCCTATCG AACCCATGAC GACACCTGA
 
Protein sequence
MPTLTRKDEE TAVSASDVVL VVFDGVEVID VAGPASVFSK AEQMHPGSYR LHIASPAGGT 
VSTNGGLSFS GTSSLQQLPA SIDTLIVAGG DEPAVRAAIL EQRIGAWLRQ VAPRTRRMAS
VCSGAFALAA AGLLDGREAT THWRVCDQLQ ALRPQVRVQR ERIYVHDGPV WTSAGVTTGI
ELALALVEDD LGHAVSMEIA RTLALPMLRG GAQPQLTQAL QAQASASHRL RELVAWIGTH
PQDDLSVEAL AERVQMSPRN FARAFAAETG CTPARFVEQV RVAAAAQLLR QTRWPQDRIA
SRSGFRSVDA LQRAFARQHG LTPQAYRTHD DT