Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3892 |
Symbol | |
ID | 7970321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4123894 |
End bp | 4124892 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644794478 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002945772 |
Protein GI | 239816862 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.186679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCACCC TGACCCGCAA GGACGAAGAA ACCGCGGTTT CTGCCAGCGA CGTGGTGCTG GTGGTGTTCG ACGGCGTTGA GGTGATCGAC GTCGCCGGCC CGGCCAGCGT GTTCAGCAAG GCCGAGCAGA TGCATCCCGG CAGCTACCGC CTGCACATCG CATCGCCGGC CGGCGGCACC GTGTCGACGA ACGGCGGCCT GAGCTTTTCG GGCACCAGCA GCCTGCAGCA GCTGCCCGCG TCGATCGACA CGCTGATCGT CGCCGGCGGC GACGAGCCGG CGGTGCGCGC GGCCATCCTC GAGCAGCGCA TCGGTGCCTG GCTACGCCAA GTGGCGCCGC GCACGCGCCG CATGGCGAGC GTGTGCAGCG GCGCCTTCGC GCTGGCCGCG GCGGGCCTGC TCGACGGCCG CGAGGCCACC ACGCACTGGC GCGTGTGCGA CCAGCTGCAG GCGCTGCGGC CGCAGGTGCG GGTGCAGCGC GAGCGCATCT ACGTGCACGA CGGGCCGGTG TGGACCTCGG CCGGCGTCAC CACCGGCATC GAGCTTGCGC TTGCGCTGGT CGAGGACGAC CTCGGCCATG CCGTGTCGAT GGAAATCGCC CGCACGCTGG CGCTGCCGAT GCTGCGCGGC GGGGCGCAGC CGCAGCTGAC GCAGGCGCTC CAGGCGCAGG CCTCGGCCAG CCACCGCCTG CGCGAACTGG TGGCGTGGAT CGGCACGCAT CCGCAGGACG ACCTGTCGGT CGAGGCCCTG GCCGAGCGCG TGCAGATGAG CCCGAGAAAC TTCGCGCGCG CCTTCGCGGC CGAGACCGGC TGCACGCCGG CGCGCTTTGT CGAACAGGTC CGCGTGGCCG CCGCCGCGCA GCTGCTGCGC CAGACGCGGT GGCCGCAGGA CCGCATCGCG AGCCGCAGCG GCTTCCGCTC GGTGGACGCG CTGCAGCGCG CCTTCGCGCG GCAGCACGGC CTGACGCCGC AAGCCTATCG AACCCATGAC GACACCTGA
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Protein sequence | MPTLTRKDEE TAVSASDVVL VVFDGVEVID VAGPASVFSK AEQMHPGSYR LHIASPAGGT VSTNGGLSFS GTSSLQQLPA SIDTLIVAGG DEPAVRAAIL EQRIGAWLRQ VAPRTRRMAS VCSGAFALAA AGLLDGREAT THWRVCDQLQ ALRPQVRVQR ERIYVHDGPV WTSAGVTTGI ELALALVEDD LGHAVSMEIA RTLALPMLRG GAQPQLTQAL QAQASASHRL RELVAWIGTH PQDDLSVEAL AERVQMSPRN FARAFAAETG CTPARFVEQV RVAAAAQLLR QTRWPQDRIA SRSGFRSVDA LQRAFARQHG LTPQAYRTHD DT
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