| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3885 |
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| Symbol | |
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| ID | 7970314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4116798 |
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| End bp | 4117745 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794471 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945765 |
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| Protein GI | 239816855 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.377397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAGG TGATGTTCGA TCTCGATGTG CTGCGCAGTT TTTCCACTGG CATCGCGCTG
GGCAGTTATG CGCGCGCGGC CGACCGGCTG GGCCGCTCCA CATCGGCCGT GAGCGCGCAG
CTCAAGAAAC TGGAGGCGCA GGCCGGCACC GCGCTGTTCC GCAAGGCCGG CCGCGGGCTG
GAGCTCACCG ACGCGGGCGA AACGCTGCTG GCCTATGCCC ACCGCATGCT CGAACTCAAC
GAAGAAGCGG GTGCCGCCAT GCGCGGTGCA GACCTGCAGG GCTGGGTGCG GCTCGGCCTG
CAGGAAGACT TCGGCGAAAC GCTGCTGCCC GCGGTGCTCG GCCGCTTTGC GCGCGCGCAT
CCCAAGGTGC GCATCGAGGC CTGCGTGGCG CGCAGCGCCG AACTGCGCGA ACGGCTCGAA
CTTCGGCAGC TCGACCTGGC GCTGATGTGG GACACCGGCG AGCAGATGAC GCCGCACGGC
GAGCGCGTGG CGCGGCTGCC GCTGCAATGG ATCGGCCCGA GGTCGCCCGA TGCGCTCGAC
GCGGCCTGGT GGAAGGAGCG CGAGCGCCGC GGCAGCAGCG TGCGCAAGTC GAAGGAGCCG
CTGCCGCTGG TGCTGCTCGA TGCGCCATGC CCGCTGCGCG AGATCGTGGT GGCCGCGCTC
GACCGCGCCG GCACGCCGTG GCGCCATGCG TTCACGAGCG CCAGCCTGGC CGCGCTGTGG
GCCGCCACCT CGGCCGGGCT GGGCCTGTCG GTGCGCACAC CCTTCGGCCT GCCCGCGCAT
GTGCGTGCCA TCGACCGCGC GGCCATCGGC CTGCCGGCGC TGCCGCAGAT GTCGCTGATG
CTCTATCGCG CGCAGGCCGC GGCCGAGGCG CCGGTCGCCC GGCTCGATGC GCTGCTGCTG
GAGGCCGTGC GCGAGCATGT GCAGGCGGAG CCGGCGCAGC TTCATTGA
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| Protein sequence | MSQVMFDLDV LRSFSTGIAL GSYARAADRL GRSTSAVSAQ LKKLEAQAGT ALFRKAGRGL
ELTDAGETLL AYAHRMLELN EEAGAAMRGA DLQGWVRLGL QEDFGETLLP AVLGRFARAH
PKVRIEACVA RSAELRERLE LRQLDLALMW DTGEQMTPHG ERVARLPLQW IGPRSPDALD
AAWWKERERR GSSVRKSKEP LPLVLLDAPC PLREIVVAAL DRAGTPWRHA FTSASLAALW
AATSAGLGLS VRTPFGLPAH VRAIDRAAIG LPALPQMSLM LYRAQAAAEA PVARLDALLL
EAVREHVQAE PAQLH
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