Gene Vapar_3880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3880 
Symbol 
ID7969737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4110039 
End bp4110605 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content62% 
IMG OID644794466 
Productdeoxycytidine triphosphate deaminase 
Protein accessionYP_002945760 
Protein GI239816850 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0717] Deoxycytidine deaminase 
TIGRFAM ID[TIGR02274] deoxycytidine triphosphate deaminase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATCA AGAGCGACAA ATGGATCCGG CGCATGGCCG AGCAGAACGG CATGATCGAG 
CCCTTCGAGC CCGGCCAGGT GCGCGAGGCC GCCGGCCACA AGATCATCAG CTACGGCACC 
TCGAGCTACG GCTACGACAT CCGGTGCGCG CCTGAATTCA AGGTTTTCAC CAACATCCAC 
AGCACCGTGG TCGACCCGAA GAACTTCGAC GAGAAGAGCT TCGTCGACAT GCACGGCGAC 
TACTGCATCA TCCCGCCCAA CAGCTTCGCG CTGGCGCGCA CGGTCGAGTA CTTCCGCATC 
CCGCGCAACG TGCTCACCAT CTGCCTGGGC AAGAGCACCT ATGCGCGCTG CGGCATCATC 
GTCAACGTGA CGCCCTTCGA GCCCGAATGG GAAGGCTACG TGACGCTCGA ATTCAGCAAC 
ACCACGCCGC TGCCCGCCAA GATCTATGCG GGCGAGGGCT GCGCGCAGGT GCTGTTCTTC 
GAGAGCGACG AAGTCTGCGA AACCAGCTAC AAGGACCGCG GCGGCAAATA CCAGGGACAG 
CGCGGCGTCA CGCTGCCCAA GACCTGA
 
Protein sequence
MSIKSDKWIR RMAEQNGMIE PFEPGQVREA AGHKIISYGT SSYGYDIRCA PEFKVFTNIH 
STVVDPKNFD EKSFVDMHGD YCIIPPNSFA LARTVEYFRI PRNVLTICLG KSTYARCGII 
VNVTPFEPEW EGYVTLEFSN TTPLPAKIYA GEGCAQVLFF ESDEVCETSY KDRGGKYQGQ 
RGVTLPKT