| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3879 |
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| Symbol | |
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| ID | 7969736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4109052 |
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| End bp | 4109939 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794465 |
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| Product | protein of unknown function zinc metallopeptidase putative |
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| Protein accession | YP_002945759 |
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| Protein GI | 239816849 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2321] Predicted metalloprotease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATGGG AAGGCAACGA ACAATCCGAG AACGTGGAAG ACCGCCGCGG TGAAGACGGC
GGCGGCGGTG GCGGCGGCTT CATCGGCGGG CGCAGCATCG GCATCGGCAC CATTGCCGTG
GCGCTGATCG CAGGCTGGAT CTTCGGCATC AATCCGCTGA CCGTGCTGAG CCTGCTGAGC
GGCGGCGGTG GCGAACAGGT GCAGGTGCAG CAGCAGCAAG GCCCTGCGCC CAAGCCGCCC
TCGAACGACC GCGAAGCGGC CTTCGTCTCG ACCGTGCTGC GCAACACCGA GGTGGTGTGG
AGCGGCATCT TCCGGCAGAA CGGCGGCAGC TACCAGCCGC CGCGGCTCGT GCTGTTCCGC
GGCGCCACGC CCACGGCATG CGGCACCGGC CAGGCGGCGA TGGGGCCGTT CTACTGCCCC
GGCGACAAGA AGGTCTACAT CGACCTCGCC TTCTACGACA CGCTCAAGAA CCAGCTCGGC
GCGCCCGGCG AATTCGCGCA GGCCTACGTC ATTGCGCACG AGGTCGGCCA CCACGTGCAG
GACGAGCTCG GCGTGACCGC CAAGGTCGAC GGCATGCGCG GGCGCCTGAG CCAGTCGCAG
AACAACGCGC TGAGCGTTCG CGTCGAGCTG CAGGCCGACT GCTTTGCCGG CATCTGGGCG
CACCATTCGC AGGAGTCGAA GAAGTGGCTC GACCCGGGCG ACATCGAGGC CGCGATGAAT
GCCGCGCAGA AGATCGGCGA CGACGCGCTG CAGCGTTCCG CGGGCCGCGC CGTGGTGCCC
GACAGCTTCA CCCACGGATC GAGCGCGCAG CGCCAGCGCT GGTTCGGCGC GGGCTATCAA
AGCGGCGATG TCAAGTCCTG CGACACCTTC AATGCACGCA ATCTTTGA
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| Protein sequence | MRWEGNEQSE NVEDRRGEDG GGGGGGFIGG RSIGIGTIAV ALIAGWIFGI NPLTVLSLLS
GGGGEQVQVQ QQQGPAPKPP SNDREAAFVS TVLRNTEVVW SGIFRQNGGS YQPPRLVLFR
GATPTACGTG QAAMGPFYCP GDKKVYIDLA FYDTLKNQLG APGEFAQAYV IAHEVGHHVQ
DELGVTAKVD GMRGRLSQSQ NNALSVRVEL QADCFAGIWA HHSQESKKWL DPGDIEAAMN
AAQKIGDDAL QRSAGRAVVP DSFTHGSSAQ RQRWFGAGYQ SGDVKSCDTF NARNL
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