| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3878 |
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| Symbol | |
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| ID | 7969735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4107460 |
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| End bp | 4108920 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794464 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_002945758 |
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| Protein GI | 239816848 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCT CCTTCTCCAA TCTATCGCTG GCGGAACCGC TGGCGCGCGC CGTAGCCGAA
ATGGGCTACG AGACCATGAC TCCCATCCAG GAACAGGCCA TTCCGGTCGT GCTTTCGGGG
CAGGACGTGA TGGGGGCCGC GCAGACCGGC ACCGGCAAGA CCGCGGCGTT TTCGCTGCCG
CTGCTGCAGC GCATGCTCAA GCACGAGAAC GCCTCCACCT CGCCCGCGCG GCATCCGGTG
CGTGCGCTGG TGCTGTTGCC CACGCGCGAA CTGGCCGACC AGGTGGCCCA GCAGGTCAAG
CTGTACGCCA AGTACACCAA CCTGCGCAGC ACGGTGGTGT TCGGCGGCAT CGACATGAAG
CCGCAGACGC TCGAGCTCAA GAAGGGCGTC GAAGTGCTGG TGGCCACGCC GGGCCGGCTG
CTCGATCACA TCGAGGCCAA GAACGCGGTG CTCAACCAGG TGGAGTACGT GGTGCTCGAC
GAGGCCGACC GCATGCTGGA CATCGGCTTC CTGCCCGACC TGCAGCGCAT CCTGAGCTAC
CTGCCCAAGC AGCGCACCAC GCTCCTGTTC TCGGCCACCT TCTCGCCCGA GATCAAGCGG
CTTGCGGGCA GCTACCTGCA GAACCCGGTC ACCATCGAGG TGGCGCGGCC GAACGAAACG
GCCTCCACCG TCGAGCAGCA CTTCTACAGC GTGACCGACG ACGACAAGCG CCGCGCGCTC
AAGCAGATCG TGAAGCAGCG CGGCATCACG CAGGCCTTCG TGTTCGTCAA CAGCAAGCTC
GGCTGTGCGC GCCTGGCGCG TTCGCTCGAG CGCGACGGCC TTCGCACCAC CGCGCTGCAC
GGCGACAAGA GCCAGGACGA ACGCCTGAAG GCGCTCGCCT CGTTCAAGGC CGGCGAGGTC
GACCTGCTGG TGTGCACCGA CGTCGCGGCC CGCGGCCTCG ACATCAAGGA CGTGCCCGCG
GTCTTCAACT TCGACATTCC GTTCAACGCC GAAGACTACG TGCACCGCAT CGGCCGCACG
GGCCGCGCCG GCGCCTCGGG CCTGGCCGTG AGCTTTGCGA GCGGCGGCAA CGACGCGCGC
CTGGTGGCCG ACATCGAGAA GCTGATCAAG AAGAAGATCG AGCTCGAACC CGTCGAGTTC
GAGGAAGACC GCCCGCGCGG CCGCATCAAC GACGGACGCC GCCACTGGCG CGAAGAAGGC
GAAGCCGGCG ATGCGCGCGA CGTGCTCGAC CAGCCGCGCG AGCGCCGCGA GACCGAAGCC
CGGCGCGGCG GCGGACGCCC GCACCGCGCA CCTTCCGCGC CGCGCGATCC GTTCTTCGAC
AAGCCCTACG AACCGGGCCA GGCCGACGCC ACGCCGGCCT GGGAAGCCGC CGCCAAGGCA
GCACCTTCAC GCGGCATCTC GAGCAACATC AAGACCAAGC GCAAGGTCGC GGCCCTCTTC
AAGAGCGCCG AAACCAGCTG A
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| Protein sequence | MTSSFSNLSL AEPLARAVAE MGYETMTPIQ EQAIPVVLSG QDVMGAAQTG TGKTAAFSLP
LLQRMLKHEN ASTSPARHPV RALVLLPTRE LADQVAQQVK LYAKYTNLRS TVVFGGIDMK
PQTLELKKGV EVLVATPGRL LDHIEAKNAV LNQVEYVVLD EADRMLDIGF LPDLQRILSY
LPKQRTTLLF SATFSPEIKR LAGSYLQNPV TIEVARPNET ASTVEQHFYS VTDDDKRRAL
KQIVKQRGIT QAFVFVNSKL GCARLARSLE RDGLRTTALH GDKSQDERLK ALASFKAGEV
DLLVCTDVAA RGLDIKDVPA VFNFDIPFNA EDYVHRIGRT GRAGASGLAV SFASGGNDAR
LVADIEKLIK KKIELEPVEF EEDRPRGRIN DGRRHWREEG EAGDARDVLD QPRERRETEA
RRGGGRPHRA PSAPRDPFFD KPYEPGQADA TPAWEAAAKA APSRGISSNI KTKRKVAALF
KSAETS
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