Gene Vapar_3875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3875 
Symbol 
ID7969732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4104849 
End bp4105472 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content69% 
IMG OID644794461 
Productcysteine dioxygenase type I 
Protein accessionYP_002945755 
Protein GI239816845 
COG category[R] General function prediction only 
COG ID[COG5553] Predicted metal-dependent enzyme of the double-stranded beta helix superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCCGCG CGTCTGGCGC CATCGCGCCG CTGCGTGAAT TCATCGTCGC ATTCGGCCGC 
CTGCTCGACA GCGGCCCCAA CGAGCCGCGC ATTCTTTCCG AAGGCGGCGC CCTGCTCCGC 
CGGCTGGTGG CGCAGGACGA CTGGCTGCCC GATGCCTTTG CCCAGCCCGA CCCGGCGCGC 
TACCAGCAGT TCTTGCTGCA CGCCGACAGC ACCGAGCGCT TCTCGGTCGT GAGCTTTGTC 
TGGGGACCGG GGCAGGCGAC GCCGGTGCAC GACCACACGG TGTGGGGCCT GATCGGCATG 
CTGCGCGGCG CCGAATACAG CCAGGCCTAT GCCGTCGGCA GCGACCGCCA GGCTCGGCCG 
CAAGGCGAAG CGGTGCGGCT GGACGCCGGC AACGTGGAGG CCGTGTCGCC CGCCATCGGC 
GACCTGCATC GCGTGCACAA CGCGCATGCA GACCGCGTAT CCATCAGCAT CCACGTGTAC 
GGCGCCAACA TCGGCGCCGT CCAGCGGCAT ACTTACCCGG CCGAGGGCGC ACGCAAGCCC 
TTTGTCTCGG GCTACTCCAA CACGCTGCTT CCCAACCTGT GGGACCGCTC ATCCGAACCC 
AGATCGACGA CGACATCCGC ATGA
 
Protein sequence
MSRASGAIAP LREFIVAFGR LLDSGPNEPR ILSEGGALLR RLVAQDDWLP DAFAQPDPAR 
YQQFLLHADS TERFSVVSFV WGPGQATPVH DHTVWGLIGM LRGAEYSQAY AVGSDRQARP 
QGEAVRLDAG NVEAVSPAIG DLHRVHNAHA DRVSISIHVY GANIGAVQRH TYPAEGARKP 
FVSGYSNTLL PNLWDRSSEP RSTTTSA