| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3874 |
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| Symbol | |
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| ID | 7969731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4103872 |
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| End bp | 4104852 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794460 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_002945754 |
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| Protein GI | 239816844 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACC TGCTGTTCTC CAAGGCCTCG CGCCGCCATT GGCTCAAGCA GGGCGCGGCG
CTCTCGTTCG CAGCCACCGC GCCGCTGGGC GCATGGGCGC AAGCGCAAAC CACGCTGGTG
CTCGGCGACC AGGCCGGCGG CCTGCGCGCG CTGTTCGAGG CCTCGAAGGC GCTCGAGGGC
GTGCCCTTCG CCTACCGCTG GGCCAACTTC CAGGGCGCGG CGCCGCTGTT CGAGGCGCAG
CGCAGCGCGG CCGTCGACAC CGCGGTGGCC GGCGACCTGC CGGTGCTGGC GGCGGCGGTC
GGCCGGACGC CGCTGAAGAT CGTCGCCACG CGCGTCGGCA AGGCCGATGC GCTGGGCATC
GTGGTGCAGC CCGATTCGCC GTTGCGCCAG GTGGCCGACC TGCGCGGCAA GACGGTGATC
GTGTCGTCCG CGCGCGGCAG CATCTCGCAA TACCAGCTCT ACGGCGCGCT CGAGGAAGCC
GGCGTGCGGC GCGACGAGGT CACGGTGAAG TTCGTGCTGC CGACCGATGC GGCCGCGGCC
TTTGCCTCGA AGCAGATCGA TGCCTGGGCT GTGTTCGATC CCTACTACAC GATCGCGCTG
CAGCAGGGCG GGCGCATCCT GCGCGATGGG CGCGGCATCA ACACGGCGCT GGGCTTCATC
ACCGCGAGCG AGCCGTCGCT CGCCGACCCC GCCAAGCGCG CCGCCATCGT GCAGTTTCTG
GACCGGCTGG CGCGCGCGGG CGAATGGGCG CTGGCCACCC CCGAGGCCTA TGCGCAGGCC
TACAGCCAGC TCACGCGCCT GCCGATCGAA TCGGCCCGCA TCATCACGGC GCGCGCCTCG
GTCACGGGCC GGCCAGTGTC CGAAGCCGAC ATTGCCGCGC TGCAGACGGT GGCCGACCGC
TCGGCGCGCG ACGGCATCCT GCCGCTGCGC GTTGACGTGC GCGCCATCAC CGATGCGCAG
CTGTGGAAGC GTCCCGCGTG A
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| Protein sequence | MTDLLFSKAS RRHWLKQGAA LSFAATAPLG AWAQAQTTLV LGDQAGGLRA LFEASKALEG
VPFAYRWANF QGAAPLFEAQ RSAAVDTAVA GDLPVLAAAV GRTPLKIVAT RVGKADALGI
VVQPDSPLRQ VADLRGKTVI VSSARGSISQ YQLYGALEEA GVRRDEVTVK FVLPTDAAAA
FASKQIDAWA VFDPYYTIAL QQGGRILRDG RGINTALGFI TASEPSLADP AKRAAIVQFL
DRLARAGEWA LATPEAYAQA YSQLTRLPIE SARIITARAS VTGRPVSEAD IAALQTVADR
SARDGILPLR VDVRAITDAQ LWKRPA
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