| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3872 |
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| Symbol | |
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| ID | 7969729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4101541 |
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| End bp | 4102530 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794458 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002945752 |
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| Protein GI | 239816842 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCTG ACTTCCCCAT CGACAGGCGA CGCCTGCTCC AGGCCGCCGC GGGCTGGAGC
GCCCTGGGCG CGGTGGGCGC GGCACCGGCG CGCGACCTTT CTGGCGTGAC ACTGCGCGTG
GGCACCTACA AGGGGCTCTG GCGGCCGCTG CTGCAGGCCT CCGGCCAAGC CAATACGCCC
TACAAGATCG ACTGGCGCGA GCTCAACAAC GGCGTGCTGC ACATCGAGGC CATCAACGGC
GATGCGCTCG ACCTGGGCTC GGGCAGCGAG ATCCCGCCGG TGTTCGCGGC GCGCCAGAAA
TCCAGCGTGC GGCTGGTGGC CGTGACGCAT GAAGACCTCA ACAACCAGGC CACGCTGGCG
CGCAAGGATT CGCCGATCCG CCGCATCGCC GACTTCAAGG GCAAGCGCGT GGGCTACGTG
CGCGCCACCA CCTCGCACTA CTACCTGGCC AGGCAGCTGG CCGAGGCGGG GCTTTCGTTC
AGCGACATCC AGGCCGTGAG CCTCACGCCT TCGGACGGCC TCTCGGCCTT CGCGCGCGGC
GACCTCGATG CCTGGGCCAT CTACGGCTAC AACGGCCAGC TGGCGCGCAC GCAGTACGGC
GCGCGCACCA TCAAGACCGG GGTGGGCTAC CTCTCGGGCA ACTTCCCGAT CTACGCCAAC
CCGCGTGCGC TCGACGACGA ACTGCGCCGC GCGGCGCTGG GCGACCTGCT GCAGCGCCTG
CAGCGCGCCT TCGCATGGAT CAACGGCAAC TTCCTGGCCT ATGCGCGTGC GCAGTCGGCC
GAGACGCGCG TGCCGGTCGG CGACCTGGTC GAACTCTTCA ACGGCCGCAG CGGCGACTAC
AGCCTGGGCC CGGTTACCGA TGCGGTGGTG CGCAGCCACC AGGAGGTGGC CGACACCTTC
CTGAAGATCG GCGTGCTCGA TGGGCCCGCC GACGTGAAGC CCCTGTGGGA CCGCCGCTTC
GAGAGCCTGC TGCGCCTGCC CGCCGCCTGA
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| Protein sequence | MTSDFPIDRR RLLQAAAGWS ALGAVGAAPA RDLSGVTLRV GTYKGLWRPL LQASGQANTP
YKIDWRELNN GVLHIEAING DALDLGSGSE IPPVFAARQK SSVRLVAVTH EDLNNQATLA
RKDSPIRRIA DFKGKRVGYV RATTSHYYLA RQLAEAGLSF SDIQAVSLTP SDGLSAFARG
DLDAWAIYGY NGQLARTQYG ARTIKTGVGY LSGNFPIYAN PRALDDELRR AALGDLLQRL
QRAFAWINGN FLAYARAQSA ETRVPVGDLV ELFNGRSGDY SLGPVTDAVV RSHQEVADTF
LKIGVLDGPA DVKPLWDRRF ESLLRLPAA
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