| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3862 |
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| Symbol | |
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| ID | 7969719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4090342 |
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| End bp | 4091649 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644794448 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_002945742 |
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| Protein GI | 239816832 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGACA GCAAGCTGCC ACGCTTCACC AGGCTCGACA AGTTCGATCC GCACCGCAAG
GACTTCGTGT GCAAGCACGA GGCCGACGCC AATCCGCCCA TCACGGCGGA GTCCGAAGCC
CTGTTCCAGC AGGCGCTGGC GCTGGTGAGC TACGAGATGT GGTCGGAGAA CCGCAACTAC
GCGAAGGCGG CACAGCTGTA CGAGCAGGCA ATGAAGCTGG GCCATTGGAA AGCACAGTTC
AACCTCGCGG GGCTGTATCT GCAGGGTCTC GGTGTTGAGC AGAACCCCGA GAAAGCCATC
GAGTTAACCG AAGACTTGAT GCGCAAGGGC GTGCCGGCCG CCTGGGACAA CATGGGCACG
ATGTACATGG GCGGCATCGG ATCGCTCAAG CAGGATGCAA CGGTGGCCTA TGCGTTCTGG
CAGAAGGCAG CGGACATGGG AAGCATGACG TCGCAAACGT ATCTGGGGGC GAAGCTGAAC
GCGGATCACG ATGAGCCACC TGCGTTTTGG GGCAATCGCA GTACCGGGCT CAAGATGCTG
GAATGCGCGT TTGCTCAGGG CTCGGGACAA GCAGCTCTTA CTTTGGGCGC TACTCTCAAT
GTCGTTGAAA AGGATCATGT CCGCGCGCTC AGAGTCCTGC ATGAAGGTGT GAAGCTCGGA
AACGAGAAGA GTGCTAACTA TCTGGTTGGC GCATTTGGCA GAGGCGCTCC GCTAGTTGAT
GGTGTCGTCG ACAAGTCGCG TGCAGATCGC TACAGCGCTC TCGGCGATGC GCTCTACCAC
AACCCCGATC TGCGCTTTCC GAATCTTGAC AAAGTATTGC CCTTGCCGCC CGCGCCATTG
CCCCAGTGGG ACATGAGCGC CCCCAAGACG CTCATCGATG CCGCCAAGGC CGTGGTGCCT
GGTGCCTCTT CGCCACCGCA GCAAGCACCG GCGCCAACAT CTCAACGCAC CAGCCAGCTC
GAAAGCGCCG AACGAGGCAT GCCGGCCACT CACACGCGCG TGGCTCAAGG CATCGCGCGC
GAGGCCGACT TGCCGACACC GCCGGTTCGA TGCAACGGCG CCGGGCGCTG CCTCGTCACG
GGCATCTGGC AGGCGCGCGT GCCCGACGAC CACGCGCTTG CCGCATCGTT CAACCAGTGG
CATCGCCAGG CCTATGTGAT GGAAGGTCAG CCCTTCCCCG ATCCGCGCGA ACAGTACCTG
GACATCGATC CGGCGCAGGT CATCTGGACT TGGTGGAACC AGGCCAACCA TCTGGGCTTC
GCCAGGATTC CGCAGGTCAG CGTGGGCAAT CCGCCCCTCG CGGGGTGA
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| Protein sequence | MSDSKLPRFT RLDKFDPHRK DFVCKHEADA NPPITAESEA LFQQALALVS YEMWSENRNY
AKAAQLYEQA MKLGHWKAQF NLAGLYLQGL GVEQNPEKAI ELTEDLMRKG VPAAWDNMGT
MYMGGIGSLK QDATVAYAFW QKAADMGSMT SQTYLGAKLN ADHDEPPAFW GNRSTGLKML
ECAFAQGSGQ AALTLGATLN VVEKDHVRAL RVLHEGVKLG NEKSANYLVG AFGRGAPLVD
GVVDKSRADR YSALGDALYH NPDLRFPNLD KVLPLPPAPL PQWDMSAPKT LIDAAKAVVP
GASSPPQQAP APTSQRTSQL ESAERGMPAT HTRVAQGIAR EADLPTPPVR CNGAGRCLVT
GIWQARVPDD HALAASFNQW HRQAYVMEGQ PFPDPREQYL DIDPAQVIWT WWNQANHLGF
ARIPQVSVGN PPLAG
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