| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3861 |
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| Symbol | |
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| ID | 7969718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4088851 |
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| End bp | 4090206 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644794447 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_002945741 |
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| Protein GI | 239816831 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGACG ACTCCAAAGC CCAGCCCCCT CAACCCTTCA TGTCGGACAG CAAGCTGCCA
CGCTTCACCA GGCTCGACAA GTTCGATCCG CACCGCAAGG ACTTCGCGTG CAAGCACGAG
GCCGACGCCA ACCCGCCCAT CACGGCGGAA GCCGAAGGAC TGTTCCAGCA GGCGCTGGCG
CTGGTGAGCT ACGAGATGTG GTCGGAGAAT CGCAACTACG CCAAGGCGGC ACAGTTGTAC
GAGCAGGCAA TGAAGCTGGG CCACTGGAAA GCACAGTTCA ACCTGGCCGG GCTGTATCTG
CAGGGTCTCG GTATTGAACA GAACCCCGAG AAAGCCATCG AGTTAACCGA AGACTTGATG
CGCAAGGGCG TGCCGGCCGC CTGGGACAAC ATGGGCACGA TGTACATGGG CGGCATCGGA
TCGCTCAAGC AGGATGCAAC GGTGGCCTAT GCGTTCTGGC AGAAGGCGGC GGACATGGGG
AGCATGGCAT CACAGGCGTA CATCGGGGCC AAGTTGAAGG CGACACATGA TGAACCCCCT
TCGTTCTGGG GAAATCGAGC TATTGGATTG CAGATGCTCG AATGCGCATT TGCTCAAGGC
TCTGCAAGCG GTGCTTTTGA ACTGGCAATT ACTCTCGTGG GGAAAAACCC CGAACTTCAA
GAAGACAACG GACGAGCGCT CAAAATATTT CACGAGGGTG TCAAGCTTGG TAGCCAGAAA
AGCGCAGGCT ACTTGTTCGC CTCGTTCGAC GATGGAGCAA GCCCGGTCAC TACCGGGCCT
GACAAAGCTC GTGCGCGCCG CTACAAGATC CTGGCTGATG CCCTCTATCT CAATCCTGAC
CTGCGCTTCC CCAACCTCGA CAAGGTGCTC CCCCTTCCCC CGGCACAGTT GCCCCAGTGG
GACATGGGCG CCCCCAGGAC GCTCATCGAT GCCGCCAAGG CGGTGGTGCC GCCGGCCTCT
TCGCCCCCGC AAGCACCTGC ACCGACATCT CAACGCACCA GCCGGCTCGA AAGCACCGAG
CGAGGCATGC TGGTTACTCA CACGCGCGTA GCGCAGGGCA TCGCACGAGA GGCCGACTTG
CCCACACCAC TGGTTCGATG CAGCGGCGCC GGGCGCTGCC TTGTCACGGG GATCTGGCAG
GCACGCGTGC CCGACGACCA CGCGCTTGCC GCATCGTTCA ACCAGTGGCA TCGCCAGTCC
TATGTGATGG AAGGTCAGCC CTTCCCCGAT CCGCGCGAAC AGCACCTGGA CATCGATCCG
GCGCAGATCA TCTGGACCTG GTGGAACCAG GCCAACCATC TGGGCTTCGC CAGGATTCCG
CAGGTCAGCG TGGGCAATCC GCCCGTCGCA GGCTGA
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| Protein sequence | MQDDSKAQPP QPFMSDSKLP RFTRLDKFDP HRKDFACKHE ADANPPITAE AEGLFQQALA
LVSYEMWSEN RNYAKAAQLY EQAMKLGHWK AQFNLAGLYL QGLGIEQNPE KAIELTEDLM
RKGVPAAWDN MGTMYMGGIG SLKQDATVAY AFWQKAADMG SMASQAYIGA KLKATHDEPP
SFWGNRAIGL QMLECAFAQG SASGAFELAI TLVGKNPELQ EDNGRALKIF HEGVKLGSQK
SAGYLFASFD DGASPVTTGP DKARARRYKI LADALYLNPD LRFPNLDKVL PLPPAQLPQW
DMGAPRTLID AAKAVVPPAS SPPQAPAPTS QRTSRLESTE RGMLVTHTRV AQGIAREADL
PTPLVRCSGA GRCLVTGIWQ ARVPDDHALA ASFNQWHRQS YVMEGQPFPD PREQHLDIDP
AQIIWTWWNQ ANHLGFARIP QVSVGNPPVA G
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