| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3843 |
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| Symbol | |
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| ID | 7969700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4065227 |
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| End bp | 4066273 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794429 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945723 |
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| Protein GI | 239816813 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGGCC TCGATCTCAT CAAAACATTC CGCGAAGTGG CGTTCCGGCG CAGCTTCTCC
CGCGCGGCCA TTTCGCTCGG CATGTCGAAA GCCACGGTCA GCCGCTACGT GGCCGAACTC
GAAACGCGCA GCGGCGTGCG CCTGCTCAAC CGCTCCACGC GTTCGCTGAG CCTGACCGAT
GCCGGCCAGG TACTGCTCGA CCGCAGCACC GAGCTGGTGG CCATGGCCGA GAACACGCTC
AACGACCTGC AGGCCCACGG CTCGCACCCG CAGGGGCGGC TTCGCATGAG CGCGCCGCAC
GGGCTGATCG CGGGCTGGCT GTCCGACGTG ATCGCCGAGT TCATCCAGCT CTACCCCGAC
GTGTACGTGA GCCTGGTGTT CACCAACGAC GACCTCGACC TGATCGAAGA AGGCATCGAC
ATCCACCTGA CGGGCGGGCG CATCGACGAC ATGAACCTGA TCGTGCGCCG GCTGGTGCCG
TTCGACATGG TGGTCTGCGC GAGCCCGGCC TACTGGGCGC GGCGCGGCAT TCCCGCGGTG
CCCGAAGACC TGGGCCGCCA CGACGTGCTG AGCTATTCGG CCAAGCCCAC CACCCACCTG
CCCTTCGAGA CCGGCGGCAA GGCGGTCGAG GTGCCGGTGC ACAGCCGCAT GGAGGCCAAC
GACGCCGTTG CGCTCATCGA GCTGGCGTTG CGCGGCGCGG GCGTGGCCTA CGTGCCCGAG
CCGCTGGCGC AGTCGCACCT GGAGCGCGGC GCGCTGGTGC CGGTGCTGCG CGAGCACATG
CCGAGCGACC ACTGGCTGTA TGCCGCCTAC TCGCAGCGCC GCCACAACAG CGCCGCGATG
CGCACCATGC TCGACTTCCT GGAGCAGTCG ATGGCCCGGC ACGGCAATCC GCCCGCGATG
CCGCCGCTGC CGCCCGCGCT GCAGGTGCTG GCCTCTCCTC CCTCTTCTTC TGTGGCTGCT
GCCGCTACAT GCGCCCTTTC CAGGGTACCA GGCGCCGCTC GAGCCACCGC ATCAGCAGGT
CGAACAGATA GGCCACCACG CCGATGA
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| Protein sequence | MDGLDLIKTF REVAFRRSFS RAAISLGMSK ATVSRYVAEL ETRSGVRLLN RSTRSLSLTD
AGQVLLDRST ELVAMAENTL NDLQAHGSHP QGRLRMSAPH GLIAGWLSDV IAEFIQLYPD
VYVSLVFTND DLDLIEEGID IHLTGGRIDD MNLIVRRLVP FDMVVCASPA YWARRGIPAV
PEDLGRHDVL SYSAKPTTHL PFETGGKAVE VPVHSRMEAN DAVALIELAL RGAGVAYVPE
PLAQSHLERG ALVPVLREHM PSDHWLYAAY SQRRHNSAAM RTMLDFLEQS MARHGNPPAM
PPLPPALQVL ASPPSSSVAA AATCALSRVP GAARATASAG RTDRPPRR
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