| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3837 |
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| Symbol | |
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| ID | 7969694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4058521 |
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| End bp | 4059834 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794423 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002945717 |
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| Protein GI | 239816807 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.550889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAA GCGACGAGAA AGCGATTCGC AGGGTGGTGG CCTCGGCCCT GGTGGGCGCC
ACCATCGAGT GGTACGACTT CTTCCTGTAC GGCGTGGTGG CCGGCATCGT GTTCAACAAG
CTCTACTTCC CGGGCAGCGA CCCGGTGGTG TCGACCTTGC TGGCCTACAC CACCTTTGCC
GTGGGCTTTG TCACGCGGCC GCTGGGCGGC GTGATCTTCG GCCACTTCGG CGACAAGATC
GGCCGCAAGA GCATGCTGAT CATCACGCTG ATGATCATGG GCGTGGCCAC CTTCCTGATC
GGCCTGGTGC CCACCTATGC GCAGATCGGC ATTGCGGCGC CCTTGCTGCT GCTTCTGCTT
CGCGTGGCGC AGGGCATCGG CCTGGGCGGC GAATGGGGCG GCGCGGTGCT GATGGCCTAC
GAATACGCGC CCAAGGGCAA GCGCGGCTTC TATGCCTCGC TGCCGCAGAT CGGGCTGGCC
ATCGGCCTGT GCCTGGCCTC GGGCGTGGTG GCGCTGCTGT CGTGGCTGCT GACCGATGAG
CAGTTCCTGG CATGGGGCTG GCGCATCGCG TTCCTGATTT CAGGCGTGAT GGTGGGCGTG
GGCATGTACA TCCGGCTGCA CGTGCAGGAA ACGCCGGAGT TCGCGGCCGT GAAGGCGCGC
AACGCGGAGC TGCGCATTCC GTTCATGGAC ATGCTGCGGC GCTATCCGGG CAACGTGCTC
AAGGGCATGG GCGCGCGCTA CATCGACGGG GTGTTCTTCA ACATCTTCGG CGTGTTCTCC
ATCAACTACC TGACCGGCAC GCTCAAGATC AGCCGCACCG ACGCGCTGCT GGGCGTGATG
GCCGCGGCCG TGGTGATGAT CTTCTTCATT CCCTTCTTCG GCCGCCTGTC CGACCGGATG
GGGCGCGGCA AGGTCTACAT GTGGGGTTCG CTCGTCACGG CGGTGTCGGC GTTTCCGGGC
TTCTGGCTCA TGACGCACAG CGGCGGCAAC GTGCTCCTGG TGTGGCTCGC GATCATCATC
CCCTTCGGCA TCCTGTATGC CTCGGTGTAC GGGCCGGAGG CGGCGCTGTT CTGCGACCTG
TTCGACGCCA AGGTGCGCTA CACCGGCATC TCCTTCGTCT ACCAGTTCTC GGGCATCTTT
GCCTCGGGCA TCACGCCGAT CATCGCGACC GCGCTGCTCA AGTCGGGCGG CGGCCAGCCG
TGGCAGATCT GCATGTACGT GCTGTTCGCA GGCGTGGTGT CGGCGGCGTG CGCGTGGATG
ATCGGGCGCT CCGCATCCCC GGCCGATGCG CCGGTGGCGG TGGCCTCGCG CTGA
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| Protein sequence | MSTSDEKAIR RVVASALVGA TIEWYDFFLY GVVAGIVFNK LYFPGSDPVV STLLAYTTFA
VGFVTRPLGG VIFGHFGDKI GRKSMLIITL MIMGVATFLI GLVPTYAQIG IAAPLLLLLL
RVAQGIGLGG EWGGAVLMAY EYAPKGKRGF YASLPQIGLA IGLCLASGVV ALLSWLLTDE
QFLAWGWRIA FLISGVMVGV GMYIRLHVQE TPEFAAVKAR NAELRIPFMD MLRRYPGNVL
KGMGARYIDG VFFNIFGVFS INYLTGTLKI SRTDALLGVM AAAVVMIFFI PFFGRLSDRM
GRGKVYMWGS LVTAVSAFPG FWLMTHSGGN VLLVWLAIII PFGILYASVY GPEAALFCDL
FDAKVRYTGI SFVYQFSGIF ASGITPIIAT ALLKSGGGQP WQICMYVLFA GVVSAACAWM
IGRSASPADA PVAVASR
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