| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3836 |
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| Symbol | |
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| ID | 7969693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4056866 |
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| End bp | 4058524 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794422 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_002945716 |
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| Protein GI | 239816806 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.669798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGATG AAGAGTTCGA CTACATCGTC GTCGGCGCCG GATCGGCCGG CTGCGTGCTG
GCCGGCCGGC TGAGCGAAGA CCCGGCCACG CGCGTGCTGC TGCTCGAGGC GGGCCCGGTG
GACCGGTCGC TCTGGATCCA CCTGCCCATC GGCTACGGCA AGACGATGTG GAGCCCCACC
TACAACTGGC GCTTCGAGAC CGACCCCGAC CCCAACATGA ACGGCCGGCG CATCTACTGG
CCCCGCGGCA AGACGCTGGG CGGGTCGAGC TCGATCAACG GACTGATCTA CATCCGCGGC
CAGCGCGAGG ACTACGACCA CTGGGCCGCG CTCGGCAACC CCGGCTGGAG CTACGACGAG
GTGCTGCCCT ACTTCATCCG CAGCGAAGGC AACGAGCGCG GCGCGAACGC CTTCCACGGC
GGCGACGGGC CGCTGAAGGT GTCGGACATT GCAGCGAAGC ACGAACTCAT CGAGGCCTTC
ATCGGCGGCG CGCAGCAGAT CGGCGTGCCG CGCACCGACG ACTTCAACGG CGCCGCGCAG
GAAGGCGCGG GCTACTACCA GCTCACCACG CACAAGGGCT GGCGCTGCAG CACCGCCAAG
GCCTACCTGG TGCCGGCGCG CCACCGGCCG AACCTGCGCA TCGAGACCGA TGCGCTGGCC
AGCCGGCTGG TGTTCGAGGG CCGGCGCGCC GTGGGCGTCA CCTATCGCCA AGGCGGCGAG
ATGAAGACCG CGCGCTGCCG CGCCGAGGTG CTGCTTTCGG CCGGTTCGAT CCAGTCGCCG
CCGCTGCTGC AGCTCTCGGG CATCGGCCCG CGCGCGCTGC TCGAGCGCAT GGGCATCCCG
GTGGTCCAAG AACTGCCCGG CGTGGGCGAG AACCTGCAGG ACCACCTGCA GATCCGGCTG
GGCTACGAGT GCAGCAAGCC CATCACCACC AACGACCAGC TCAACTCCTG GTTCGGCCAG
GCAAGCATGG GCCTGGAATG GCTGATGCGC CGCACCGGCC CGCTCGCGGT GGGCATCAAC
CAGGGCGGCT GCTTCATGCG CGCGCTGAAA GACGCAAACG GCCGGCCGGT GGCCGCCACG
CCCGACATCC AGTTCCACGT GGCCACGCTC TCGGCCGACA TGGCGGGCGG CAAGGTGCAT
CCGTACTCGG GCTTCACGAT GTCGGTGTGC CAGCTGCGGC CCGAGTCCCG CGGGCACGTG
CGCATCCGCT CGCTCGACGC GGCGGAGCCG CCCGAGATGC AGCCCAACTA TCTTTCCACC
GAGCTCGACC GCGCCACCAC CGTGGCCGGC GTGAAGGCGG CGCGCGCCAT TGCCGAGGCG
CCCGCGATGC GGCCCTACGT GAAGCGCGAG GTGAAGCCCG GCCCCGAGGC CGCGAGCGAT
GCCGAGCTGC TGGAGTTCTG CCGCAACAAC GGCGCCACCA TCTTCCATCC CACGGGCACC
TGCCGCATGG GCAGCGGCCC GCTCGCGGTG GTCGATGCGC GCCTTCGCGT GCACGGCGTG
GCCGGGCTGC GCGTGGTCGA CTGCTCGGCC ATGCCCACGC TGGTGTCGGG CAACACCAAC
GCACCGGCCG TGATGATGGC CGAGAAGGCC GTCGACATGA TCAGGGAGGA CGTGAGGGCG
GCAGCCGCCG CGACAACCAC ATCGGAGACA ACGACATGA
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| Protein sequence | MRDEEFDYIV VGAGSAGCVL AGRLSEDPAT RVLLLEAGPV DRSLWIHLPI GYGKTMWSPT
YNWRFETDPD PNMNGRRIYW PRGKTLGGSS SINGLIYIRG QREDYDHWAA LGNPGWSYDE
VLPYFIRSEG NERGANAFHG GDGPLKVSDI AAKHELIEAF IGGAQQIGVP RTDDFNGAAQ
EGAGYYQLTT HKGWRCSTAK AYLVPARHRP NLRIETDALA SRLVFEGRRA VGVTYRQGGE
MKTARCRAEV LLSAGSIQSP PLLQLSGIGP RALLERMGIP VVQELPGVGE NLQDHLQIRL
GYECSKPITT NDQLNSWFGQ ASMGLEWLMR RTGPLAVGIN QGGCFMRALK DANGRPVAAT
PDIQFHVATL SADMAGGKVH PYSGFTMSVC QLRPESRGHV RIRSLDAAEP PEMQPNYLST
ELDRATTVAG VKAARAIAEA PAMRPYVKRE VKPGPEAASD AELLEFCRNN GATIFHPTGT
CRMGSGPLAV VDARLRVHGV AGLRVVDCSA MPTLVSGNTN APAVMMAEKA VDMIREDVRA
AAAATTTSET TT
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