| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3828 |
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| Symbol | |
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| ID | 7969685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4047104 |
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| End bp | 4048837 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794414 |
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| Product | Cobaltochelatase |
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| Protein accession | YP_002945708 |
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| Protein GI | 239816798 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
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| TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACA TGCCCGCGAG CGCCATGCAG CGCCGCGTGC GGCAGGAGGA GCAGGTCGCC
GAACTCTGCG CGGGCGTGGT GCGCGCCTTC AGCGGCGAAC GCGAACTGCA CTTTCGCGGG
CGGCGGCTGC ACCGCGGCCG CGTGGCGCTG CCGTGGTTCG CGCCGCACCT GCATCCTTCG
CCCGAAACCG ACGACTTCGC CTCCTTCCGC GGCGTGGCCG ACGGGTTGGC GCTGCGGCTC
ACGGCGTCCG ACGCCGCGCT GCACGAAAGC CTGCGGCCCG AAGAACCGGT CGAGCGCATG
CTGTTCGAGA TGCTCGAGCA GTTCCGCGCC GAAGCCATGG CGCCCGAGAT CATGGCGGGC
ATGCGCCGCA ACCTGCGGCA CCGCCATGAG CAGTGGTCGC TCGCCTTCCA CCATTCGGGC
CTGACCGACA CCGCGCGCGG CCTGCTGCTC TATGCCGTGG CGCAGATCTG CCGCGCCCGC
GTGAGCGGCC AGCAGGTGGT GGAAGAAACC GAAGACATGC TCGAAGCCAC GCGCTTTCAC
CTTGCGCCGC TGATCGGCCA CGCGCTCGCA GGCCTGCGCC GCGACCGCGC CGACCAGGCC
GCCTACGCCG TGCACGCACT CGCCATCGCG CGCACCGTCG CCGCGATGCT GCATGAGGCC
GGCGAAGACA GCAGCGACGC ACGCGACCCG CATGTGGACG ACAAGCGCAG CGTGTTCATG
CTGGTCGCCG ACATGGACCG CGAGATCATC GAACGCTTCA CCACCGCCGA GTCGGGCCGC
AGCGCGGTGC TCGACGGCGC GGGCGGCGCC TACCGCGTCT TCACCGCCGC CTACGACCGC
GAACACGACG CCGCCGCGCT CGCGCGCAGG GAAGTGCTCG CCGGCCACCG CGAAAAGCTC
GACCGCCGCA TCGCCGCGCA GGGCGTGAAC ATCGCGCGCC TGGCCCGCGA ACTGCGTGCC
CTGCTCGCCG ACCCCACGCG CGACGGTTGG GACAGCGGCC AGGAAGAAGG CTTGGTCGAC
GGCCGCCGGC TCGCGCAGCT GGTGGCCTCG CCGACCGAGC GCCGGCTGTT CCGCACCGAG
CGCATGGAGC CGGTGGCCGA CTGCATGGTG ACGTTCCTGA TCGACTGCTC GGGTTCGATG
AAGGAGCATG CCGAATCGGT CGCGATGATG GCCGACGTGT TCGCGCGCGC GCTGGAGCAG
GCCGGCGCGG CCAGCGAAGT GCTGGGCTTC ACCACCGGCG CCTGGAATGG CGGCCGTGCG
CAGCGCGAGT GGGTGCGTGC CGGCAGGCCG CCTCACCCAG GCCGCCTCAA CGAGCGCTGC
CACATCGTCT TCAAGGCCGC CGCCACGCCC TGGCGCCGCG CACGCCCCGC GATGGCGGCG
CTGCTGAAGG CCGACCTGTT CCGCGAGGGC ATCGACGGCG AAGCGGTCGA CTGGGCCTGC
ACGCGCCTGC GCGAGCGGCC GGAGGCGCGC AAGTTGCTGC TGGTGATTTC CGACGGCTCG
CCGATGGACA GCGCGACGCA CCTGGCGAAC GATGCGCACT ATCTCGACCA CCACTTGCGC
GACGTGGTGG CGCGGCAGGA GCAGCGGCGC GACATCGAGA TAGCCGGTAT TGGTGTCGGG
CTCGATCTGA GTCCGTACTA CAGCCGCAGC CATGTGCTGG ACCTTGCTGC CTCTGCCGGC
AACACCATCT TTCGCGAGGT GATCGATTTG ATGGCGGGGC GGCATCGGCG CTGA
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| Protein sequence | MTDMPASAMQ RRVRQEEQVA ELCAGVVRAF SGERELHFRG RRLHRGRVAL PWFAPHLHPS
PETDDFASFR GVADGLALRL TASDAALHES LRPEEPVERM LFEMLEQFRA EAMAPEIMAG
MRRNLRHRHE QWSLAFHHSG LTDTARGLLL YAVAQICRAR VSGQQVVEET EDMLEATRFH
LAPLIGHALA GLRRDRADQA AYAVHALAIA RTVAAMLHEA GEDSSDARDP HVDDKRSVFM
LVADMDREII ERFTTAESGR SAVLDGAGGA YRVFTAAYDR EHDAAALARR EVLAGHREKL
DRRIAAQGVN IARLARELRA LLADPTRDGW DSGQEEGLVD GRRLAQLVAS PTERRLFRTE
RMEPVADCMV TFLIDCSGSM KEHAESVAMM ADVFARALEQ AGAASEVLGF TTGAWNGGRA
QREWVRAGRP PHPGRLNERC HIVFKAAATP WRRARPAMAA LLKADLFREG IDGEAVDWAC
TRLRERPEAR KLLLVISDGS PMDSATHLAN DAHYLDHHLR DVVARQEQRR DIEIAGIGVG
LDLSPYYSRS HVLDLAASAG NTIFREVIDL MAGRHRR
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