| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3820 |
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| Symbol | |
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| ID | 7969677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4037933 |
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| End bp | 4038874 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794406 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
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| Protein accession | YP_002945700 |
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| Protein GI | 239816790 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.550889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGCA TCATGAAGCG GATAGTGATT GCGGAGTTCA TGGACGCCGC CGCGGTTGCG
CAGTTGCGCG AGCGGCACGA CGTTCTCTAC GACGTGGCGC TGGTGGACGA CGGCGCCCGG
CTCTACAAGG AAGCGAAATG GGCCCATGCG CTCATCGTGC GCAACCGCAC GCAGGTGCGC
GGCGAACTGC TGGATGCGCT CACGCAGTGC ACGGTAGTGG GCCGCCTGGG CGTGGGCCTG
GACAACATCG ACGTGGCGGG CTGCGAAGCA CGCGGCATCC GGGTGATTCC GGCCACGGGC
GCCAATGCAC TGAGCGTGGC CGAGTACGTG ATCGCGAGCG CCATGCTGCT GCTGCGCGGC
GCCTACGGCT CCACCGCCGC GGTGGCGGCG GGGCGCTGGC CGCGCAATGC GCTGTCGAAC
GGGCGCGAGC TCGCGGGCAA GACGCTCGGG CTGGTCGGCT TCGGCGCCAT CGGGCAGCTG
ACGGCGCGGC TTGCGCAGGC GCTCGGCATG CGCACGGTGG CTTTCGACGC CATGATGGAC
GGCAGCCACC CGGCCTTCGC CGCAACGGGC ACGCAGCCAC TGGGCCTCGA TGCGCTGGTG
GCGCAGGCCG ACGTGGTGAG CCTGCATGTG CCGCTGGTAG ACGGCACGCG CAACCTCTTC
CATGCGGCGC GCATCGCGGC CGTGAAGGGC GGCGCGGTGC TCGTCAACAC CTCGCGCGGC
GGCATCGTCG ACGAAGCCGC CGTGGCGCTT GCGCTGCGCG AAGGCCGGCT CGGCGGCGCG
GCGCTCGATG TGTTCGAGGC CGAGCCGCTC GCGGCCAGCC CGCATTTCGA GGGCTGCCCC
AACCTGCTGC TGACACCGCA CATCGCGGGC GTGACGGCCG AGTCGAACGA GCGCGTGAGC
AGCCTCATTG CACAGAAGGT GCTGGAGGCG CTGGAACCAT GA
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| Protein sequence | MAGIMKRIVI AEFMDAAAVA QLRERHDVLY DVALVDDGAR LYKEAKWAHA LIVRNRTQVR
GELLDALTQC TVVGRLGVGL DNIDVAGCEA RGIRVIPATG ANALSVAEYV IASAMLLLRG
AYGSTAAVAA GRWPRNALSN GRELAGKTLG LVGFGAIGQL TARLAQALGM RTVAFDAMMD
GSHPAFAATG TQPLGLDALV AQADVVSLHV PLVDGTRNLF HAARIAAVKG GAVLVNTSRG
GIVDEAAVAL ALREGRLGGA ALDVFEAEPL AASPHFEGCP NLLLTPHIAG VTAESNERVS
SLIAQKVLEA LEP
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