| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3805 |
|---|
| Symbol | |
|---|
| ID | 7969662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4018602 |
|---|
| End bp | 4019954 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794391 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_002945685 |
|---|
| Protein GI | 239816775 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGAC CGAAGAAAAA CGAAGCGCCG GACACCACGC AGCGCGTGAA TCTGACCCTT
GGCGTCATCG AGCGGTTGAC TTGCCGCACC GACCAGAAGG CCCAGGCGTT CCTGCGCGAC
AGCCATGCGC CCGGCCTGCG CGTGCGCGTG ACGAACACGG GCGCGAAGTC GTTCGTGTTC
GAGTCCAAGC TGAACCGCCA GACCATCCGC CGCACGATTG GCGACGTTCG CGTCTGGTCC
ATCGAGCAGG CGCGTGCCGA AGCGCGCCGC CTGGCCGTCG TGTTGGACAA GGGACTGGAC
CCGCGAGAGA TTGAGCGCCA GCAAGCCGCC GACAAGGCCG CACGTGCGGC GGCCGCTGCG
GCCCACGCCG TGACCGTGGG CGAGGTGTGG CCGCTGTATC TGGAGCGCGG TCGGCCCAAG
CGCCGTGAAG CGTGGAAGCC GCGCTACCTG GCAGACCTGA AGGCGATGGC GGCACCCGGC
GGGGTGAAGA AGAAGAGAGG GCAGGGACTG ACGCGACCTG GGCCGCTCTC TCCGCTGCTC
GCGCTGCCGC TGGCGGCCAT CAACGAGGAC AGCCTGAAGG CTTGGTACGA CCGCGAAGCG
CTTGCCGGCA AGCATCAGGC GGCTCGCGCC CTGATGATGT TCCGTGGCTT TCTTCGCTGG
TGCGCTGCCC GTCCCGAATA CCGGGGGCAG ACCGACCGCG AGGCAGGCAG GGCTGCCGCC
ATCATGGAGA ACCTGCCGCG CAATACGCGC CGCACCGACG CGCTGGAGGC CGCGCAAGTG
ACCGGCTGGT GGGCAGGGGT GGCGCAACTG GGCAACAGCA CCGCATCGGC CTACCTGCGC
GCCTTGCTGC TGACAGGTGC GCGCCGCGAA GAACTGGCCG CGTTGACCTG GGCGAGTGTG
GATTTTCAGT GGCGCAAACT GACCATTGCC GACAAGGTGG ACGCGACCCG CACGATGCCG
CTGACGCCCT ACCTTGCGCA ACTGCTGGCT AGCTTGCCCA GGGTGGGTCC GTACGTGTTC
GCCAGCGTCA GCAAGTCAGG CCGCATCGCT GATGCCCGCT CAAGCCACGC CAAGGCCCTG
CAAGGCGCTG GCATTGAGGG CCTGACCATC CACGGCCTGC GTCGTTCGTT TTCGCTGCTG
GGCGAAGCTG CCGGAGCGCC GGCAGGCGCC ATTGCCCAAG TGATGGGCCA TAAGCCCAGC
GCCACCGCTG AAGGCTATCG GCCGCGCAGC ATTGACGCGC TACGCCCGTT CCTGGAGCAC
ATCGAGGCGC ACATCCTGGA CTTGGCTGGC GTGGTGTATG TGCCTGATGT GGAGCCTGGG
AAGCTGCGCG TGGTCGCGGG TGCTGCCGCC TGA
|
|---|
| Protein sequence | MARPKKNEAP DTTQRVNLTL GVIERLTCRT DQKAQAFLRD SHAPGLRVRV TNTGAKSFVF
ESKLNRQTIR RTIGDVRVWS IEQARAEARR LAVVLDKGLD PREIERQQAA DKAARAAAAA
AHAVTVGEVW PLYLERGRPK RREAWKPRYL ADLKAMAAPG GVKKKRGQGL TRPGPLSPLL
ALPLAAINED SLKAWYDREA LAGKHQAARA LMMFRGFLRW CAARPEYRGQ TDREAGRAAA
IMENLPRNTR RTDALEAAQV TGWWAGVAQL GNSTASAYLR ALLLTGARRE ELAALTWASV
DFQWRKLTIA DKVDATRTMP LTPYLAQLLA SLPRVGPYVF ASVSKSGRIA DARSSHAKAL
QGAGIEGLTI HGLRRSFSLL GEAAGAPAGA IAQVMGHKPS ATAEGYRPRS IDALRPFLEH
IEAHILDLAG VVYVPDVEPG KLRVVAGAAA
|
|---|
| |