Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3789 |
Symbol | |
ID | 7970949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4004298 |
End bp | 4005122 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794375 |
Product | lipoprotein, YaeC family |
Protein accession | YP_002945670 |
Protein GI | 239816760 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGAACC TCTTTCGCCG CCGCAGCCTC GTCCTTGCCA CGCTGGCCGC CTCCCTCATC TTCTGCGGCA GCGCCGCCTT CGCGCAGGAC AACGGCAACA AGAACACCGT CAAGGTCGGC ATCTCGGTCG GCAGCGCCGA GCAGGTGTTC GAGGTGGTGA AGAAGGTGGC CGCCAAGGAC GGCCTGAACA TCCAGCTCGT GGTGTTCAAC GACTACCAGC TGCCCAATGC CGCGCTGGCC TCGGGCGACC TGGACGCCAA CGCCTTCCAG CACCAGCCCT TCCTGGACAA CCAGAACAAG GCGCGCGGCT TCGACATCGT GCCCGTGGGC CTCACCATCA CCGCGCCGCT GGGCTTCTAC TCGCGCAAGA TCAAGTCGAT CGACCAGCTG CCCGACGGCG CGGCGGTCGG AATCCAGAAC GACCCGTCGA ACGGCAACCG CGCCCTGCTG CTGTTGCAGT CGGCCGGTCT CATCACGCTG AAGCCCGAGG CGGTGAAGAA CAACACGGCC ACGCCGCTGG ACGTGGTGAG CAACCCCAAG AAGCTCAAGC TCGTGCCGCT CGACGCCGCC CAGCTGCCGC GCTCGCTCGA CGACCTGGCG ATTGCCGCCA TCAACAACGA CTACGCCGAG AAGGCCGGCC TGTCGCTCAA CAAGGACGCT GTGATCAAGG AGGCCGCGAA GAGCCCCTAT GCCAACCTGA TCGCCGTGCG CCGCGCCGAC AAGGACAAGC CCTGGGCCAG GCGGCTGGTG GCGGCCTACC AGTCGCCGGA GGTGAGGAGC TTCATCGAGA CGCAGTTCAA GGGGTCGCTG GTGCCCGCGT TCTGA
|
Protein sequence | MQNLFRRRSL VLATLAASLI FCGSAAFAQD NGNKNTVKVG ISVGSAEQVF EVVKKVAAKD GLNIQLVVFN DYQLPNAALA SGDLDANAFQ HQPFLDNQNK ARGFDIVPVG LTITAPLGFY SRKIKSIDQL PDGAAVGIQN DPSNGNRALL LLQSAGLITL KPEAVKNNTA TPLDVVSNPK KLKLVPLDAA QLPRSLDDLA IAAINNDYAE KAGLSLNKDA VIKEAAKSPY ANLIAVRRAD KDKPWARRLV AAYQSPEVRS FIETQFKGSL VPAF
|
| |