| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3788 |
|---|
| Symbol | |
|---|
| ID | 7970948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4003184 |
|---|
| End bp | 4004056 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794374 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002945669 |
|---|
| Protein GI | 239816759 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1135] ABC-type metal ion transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACC CTCCGTCCGA TGCGGGCCGC GGCAACGCGC AGCCCGTGAT CCGTCTTCAA
TCCGTGCAGA AGTCATTCGC ACTGCCGAGC GGCGAGGTGT TCGACGCCGT GCAGTCGCTC
TCGCTCGACA TCCACCAGGG CGACGTGTTC GGCCTGATCG GCAAGAGCGG CGCGGGCAAG
TCGACGCTGC TGCGCCTCAT CAACCTGCTG GAGCGGCCCG ATGCGGGCCA GGTCTTCGTG
GGCGGGCGCG ACCTCACCAC GCTCTCGCGC CGCGAGCTGC GGGGCACACG CCAGAACATC
GGCATGATCT TCCAGCAGTT CAACCTGCTG CAGAACGCCA CGGTGTTCGA TAACGTGGCC
TTCCCGCTGA AGATCCACGG CCGCCATTCC AGGGCCGAGA TCGACGCCCG CGTGCGCGAA
TGCCTGGCCC TGGTGGGCCT GGCCGAGAAG ATCGACACCT ACCCGGCCCA GCTCTCGGGC
GGCCAGAAGC AGCGCGTGGC CATTGCGCGC GCGCTGGCCC CGCGGCCGCA GGTGCTGCTG
TGCGACGAGC CCACCTCGGC GCTCGACACC GAAACCACGC GCGCGCTGCT CGAGACGCTG
CGCGACATCA ACCAGAAGAT CGGCGTGACC ATCGTGATCG TCACGCACGA GCTCTCGGTG
GTCGAGGTGC TGTGCCGCAA CGTGGCCATC CTGGAGAAGG GCCGGCTGGT GGAGCAGTTC
GCGGTGGTCG ATGCACCGAG CGAAGAACGC AAGACCGCGC TGGGCCGCGA GATCGACGAG
CTGGTGCGCC GCCGCGAACG CGAGGCGCGC GAACCCATTG CGCCGCGCCC GCCGTCATTG
CAGCGCAGCC CGCAGGAGGT GGCCTATGTT TGA
|
|---|
| Protein sequence | MSNPPSDAGR GNAQPVIRLQ SVQKSFALPS GEVFDAVQSL SLDIHQGDVF GLIGKSGAGK
STLLRLINLL ERPDAGQVFV GGRDLTTLSR RELRGTRQNI GMIFQQFNLL QNATVFDNVA
FPLKIHGRHS RAEIDARVRE CLALVGLAEK IDTYPAQLSG GQKQRVAIAR ALAPRPQVLL
CDEPTSALDT ETTRALLETL RDINQKIGVT IVIVTHELSV VEVLCRNVAI LEKGRLVEQF
AVVDAPSEER KTALGREIDE LVRRREREAR EPIAPRPPSL QRSPQEVAYV
|
|---|
| |