| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3786 |
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| Symbol | |
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| ID | 7970946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4001671 |
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| End bp | 4002492 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794372 |
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| Product | NLPA lipoprotein |
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| Protein accession | YP_002945667 |
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| Protein GI | 239816757 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
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| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCG CTCTGCTGCG CCGCTCCGTC CTTGCCCTGT CCCTGGTTGC CTTGTCGTTC
GGCGGCCTTT CGTTGGCGCA GGCCCAGGAA GCCAAGAAGA ACCTCGTGAT CGGCGGCACC
GCCGGCTCCA ACATCGACCA GCTCAAGGCC GGCATCGTGC CCATCCTCGA GAAGAAGGGC
TACAAGGTGA AGCTGGTCGA GTTCAACGAC TACGTGCAGC CCAACCTCGC GCTCGCGCAA
GGTTCGCTCG ATGCCAACTT CTTCCAGCAC CAGGTCTACC TGAAGAAGTT CTCGGCCGAC
CAGAAGCTGG ACCTTGCCGA ACTGGTGCAG GGCCCGATCG CCCCGCTGGG CGTGTACTCC
ACCAAGCGCA AGACGCTGGC CGAGGTGAAG GAGGGCGACC GCTTCACGCT GCCCAACGAC
CCGAGCAACC TGGCCCGCGC GCTGGTGCTG CTGGAGCAGA ACAAGCTCAT CACCATCAAG
CCCGGCGTCG ATGCGCTGCG CGCATCCGAG AAGGACGTGG CCGAGAACCC GAAGAAGCTC
AAGTTCATTC CGCTCGAGGC CGCGCAGCTG CCGCGCTCGC TGGGCGACAC CGAGTACGCC
ATCGTCAACG GCAACTTCGC GATCTCGTCG GGCCTGAAGC TGAGCGAAGC CGTGGTGCTC
GAGAAGACGC CCGACTACTA CCTGAACGTG GTGGCCGTGA AGAGCGCGGA CAAGAACGCG
CCCTGGGCCA AGGACATTGC CGAGGCCTAC CGCTCCAAGG AATTCAAGGC CGTGGTCGAC
AGCAAGTTCC AGGGCTATGC CAAGCCCAGT TTCCTGCAGT AA
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| Protein sequence | MKTALLRRSV LALSLVALSF GGLSLAQAQE AKKNLVIGGT AGSNIDQLKA GIVPILEKKG
YKVKLVEFND YVQPNLALAQ GSLDANFFQH QVYLKKFSAD QKLDLAELVQ GPIAPLGVYS
TKRKTLAEVK EGDRFTLPND PSNLARALVL LEQNKLITIK PGVDALRASE KDVAENPKKL
KFIPLEAAQL PRSLGDTEYA IVNGNFAISS GLKLSEAVVL EKTPDYYLNV VAVKSADKNA
PWAKDIAEAY RSKEFKAVVD SKFQGYAKPS FLQ
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