Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3781 |
Symbol | |
ID | 7970941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3998428 |
End bp | 3999477 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794368 |
Product | pentapeptide repeat protein |
Protein accession | YP_002945663 |
Protein GI | 239816753 |
COG category | [S] Function unknown |
COG ID | [COG1357] Uncharacterized low-complexity proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGCG ATGAACTCGT CGACAGGATC CGCCATGGCA CCCAGGTGGG CAACGCCGAT TGCAGGGGGT GGGACTTGAG CGGCCTCGAC CTCTCCGGCG CGATGATGGA CGACGTCGAT TTCAGCGGCG CGAACCTCGC CCGGGCCAAT CTCGAAGGCA GCTCGCTGTC GCACTGCAAG CTTTCAGGCT GCGACTTTTC CTTCGCCCAG TTGAAAGAGG CGCAGTTCTT TCGCAGCCGC ATGGAGGCGG CGCGGTTCGA TGCCGCCACG CTGGAAGGCG CCTCCTTCGT CGAGTGCCAC GCGGCGCGGG CGAGCTTCGC GCAGGCCAGG CTCGATCTCA CCAAGTTCTT TCGCTGCGAG CTCACGCAAA GCCGCTTGCA GTCGCGGCAG TTCGAGCGCG CGAGCTTCAT GGAATCGCAG CTCGACCGGG CCGATTTCAC CGGCGCGGCG CTGGGCCACG TGACCTTCTA CCGCCTCGAC CTGAAGACGG CGATTTTCCA GGGTGCATCC GGCCTCAACG CAATGTTCCT GGAGTGCGAC CTGAGCGGCC AGCGCTTCGC GGGCCTCTCG CTGTGCATGT GCCAGTTCAC GGACAGCCGC CTGGACGATG CCGACTTCAG CGGCGCCACG CTCACCCAAG CCAACTTCAA GGGCACCACG CTGAAGCACG CGGACTTCTC GAAAGCGGAC GCATGCCAGG CGCTGTTCCC GGAAGCCGAC CTCAGCGATG CGAACTGCAG CGGCGGGCGC TTCGACCAGT CGATCTGGGC CGAGGCCCTG CTGGAACGCG CCGACTTCTC GCAAGCCCGC ATGCCGCTCG GCGTGTTTCA CCACGCGCGC TGCGCCGGCG CGAACTTCCG CAACGCCGAC ATGCAGGACG CCGATCTTTC ATATGCCGAC CTGACCGGTG CCGACCTGGG CGGTGCTCAC TTCCTTCGCA CGCGCCTGCA CCGCGCCCAG CAGCAGGGCG CGCGGTTTTC CAGCCGCAAC GGAATCATCG ACAACGAGCC CGAGCTCTTC AAGGCACAGG CATGGTCCGA CTCGCACTGA
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Protein sequence | MTRDELVDRI RHGTQVGNAD CRGWDLSGLD LSGAMMDDVD FSGANLARAN LEGSSLSHCK LSGCDFSFAQ LKEAQFFRSR MEAARFDAAT LEGASFVECH AARASFAQAR LDLTKFFRCE LTQSRLQSRQ FERASFMESQ LDRADFTGAA LGHVTFYRLD LKTAIFQGAS GLNAMFLECD LSGQRFAGLS LCMCQFTDSR LDDADFSGAT LTQANFKGTT LKHADFSKAD ACQALFPEAD LSDANCSGGR FDQSIWAEAL LERADFSQAR MPLGVFHHAR CAGANFRNAD MQDADLSYAD LTGADLGGAH FLRTRLHRAQ QQGARFSSRN GIIDNEPELF KAQAWSDSH
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