| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3780 |
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| Symbol | |
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| ID | 7970940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3995831 |
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| End bp | 3998431 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794367 |
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| Product | pentapeptide repeat protein |
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| Protein accession | YP_002945662 |
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| Protein GI | 239816752 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1357] Uncharacterized low-complexity proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCG TCAAGCCGCT GCGCCTGGGC ATTCTCACCC GGCCATACCG CTGGCAGGGC
GTCGACCAGC TCGGCGTGGC CGTCACGGCG TTCGCCAGCC TCGAGGCGGA ACCGAAGCTC
ATGGCCGACC AGGAGCTGTG GCAGACCGTC GGCGAAGAGA TCGGCGGCCT GGGCGTGTTC
GACGCGGGCG TGCCCAAGTG CATGCCGGAG GTGCTCGCGA GCGGCCATGG CTACACCCAC
CACCAACAAG ACAAGACCGC CTGCGCCGTG CGCCTGCGCG TCGCCGATCT CGAGAAGTCC
CTGCACGTGT CGGGCGACCG CTACTGGCTC GACGGCCGCC TGACCGCACC GCAGCCCTTC
GAAGCCATGC CGCTGGACTG GGCGCACGCC TACGGCGGGC CGGGCGTGCC GGAGAACCCG
GCAGGCATCG GCGCGTTCGA CGAGCTCATC AACGGCGTCC GCACGCGCCG CGCACCCAAC
GTGGAGGCCG TTCATGCCCG CGTGCGCTCG CGCGGGCAGG CGGTGGCGCC CGCGAGCTTC
GGCGCCGTGC CCATCGACAG CCCGCAGCGC ATGGCCCTGA TGGGCAGCAA GTTCGGGCAG
CACTGGCTGG AGCACCACTT CCCGGGGTTC GCGCAGGACA TGGACTGGCG CTTCTTCAAC
GCCGCGCCCG AAGACCAGCG CTGGCCCGCG CGCCAGGAGC TCCCGCCCGG CGCGCCCTAC
GAAATTCTCA ACATGCACCC GGAAAAGCCG GTGCTGAGCG GCCGCCTGCC CGACTGGCGC
GCACGCTGCT TCGCAAGCTT CGACAAGGAA GGCCGCGGCC TGCACGAGAT CGGCCTGCGC
CTGACCACGG CCTGGTTCTT CCCGCACCGC GAGCGCGTGG CGCTGATCTG GCACGGCGTG
CGGCCGGTGC GCGAGGACGA TGCGGCAGAC GTGCGGCACA TCATGCCGGC ACTCGAGCTG
CCGCAGGAGC CGCGCGAGCT CGCGCATTAC CAATCCGTGC TGCTGCAGCG CCTGGACACC
GCGCGCGGCG GCCTGCTCGC CTTTCGCGAC AGCGACCTCG CACCCAAGGC GGTCCTCGGG
CGCTGGGGCA TCCTCGACGC GCCCGACCCG ATGGCGCGGC CGCTGCTGCG CAACCTGCGT
GCCGGCCAGC AGCGCGACCA CGAAAGCCGC CGCGCCGAAC TCGTCGCGCT GGGCGTCGAT
CCCGACAAGT ACCTGCCCGC GCCCCAGCCC CCGGCCGCGC CGCTGGAGTT CGACGACGTG
CCCGAGTACT TCGAGCGCAT GCAAGGGGAA ATGATGGAAG CCCGAAAAAA CCTGCAAGCC
CAGGGCGAAC AGATGCGCCG CAGGCAGGAG GAAGAACTCG ACCCCGCGCT GCTGCAGAAA
AGCCGCGAGC AGCCGCAGCG CTTCGATCCC GACGCGCTGA TACGGCAGCT CGAACAGCTT
GCCGCCGCGC CACCCGCCGG GACCCCCGCA AGCCCCCCGC CCACGCTCAT CTCCCTGGGC
ACCAAGGATC GGATGACCGC GCAGATCCGG CAGGGCTACC TCCACGGCGC CCACCTGTCC
GACGCCGCGC CGCCCATGCC CTCGTTCCGC GCCGCGAAGA TCCGGCGGCG GCTGGCCGAG
GCCGCGCCCG GGGCGCGCAA TTTCTCGGGC ATGCGGCTCG TCGGGGCCGA TCTCTCGGAC
ATGGACCTGC GCGGGGCCGA CTTCTCCGGC GCCGCACTCG AAGACGCCAA CCTCGACAAC
GCGCAACTGT CGGACGCCAA CTTCAACGGC GCCGTGCTGG CACGGGCCCG GCTCTCGCGC
ACCTCGCTGG CCAGTGCGAC CTTCCGCAAC GCCAACCTCG GCGGCGCGCA CTGCGAGTTC
GCCGATTTCT CCGGCGCCGA CCTGAGCAGC GCCAACTGCG AGAAGACGCG CTTCGCGTCC
TGCAGCATGG CCAACACCGT GCTCGACCAG ACGCGCTTCA CCGCAAGCGA GATGAGCCAT
TGCGACTTTC GCGGCTCCGA CTGGCACCAG GTCTTCCTGA CCAAGCTGCG CATGAGCGGC
ATGGCCTTCG ACGGCGCCTC CTTCCAGCAG GTGGTATGGC TCGAATGCAC CCTGGCGGAT
GTGCGCTTTG CCAATGCGTC CCTGGTGCGC TGCAGCTTCG TCACGAGCGA CTGCAGCCGG
TCGGTCGATT TCTCCGACGC CCGGCTCGAT GCCTGCAGCT TCGCGCACGG CAGCACGCTG
GCCGGCGCGG TATTGCGCCG CGCCGCGCTC AAGCAATGCG GCCTGCGCAC GACGCCGCTG
CAGCAGGCGG ACCTGCGCGA AGCGCGCCTG GACAACTGCG ACTTTTCGGA ATGCGCGCTG
CAGGGCGCCA AGCTCGAGCG GCTCGTCGCG GGCGAGAGCC TCTTCGTGCG CGCCGACCTC
ACCGGCGCCA GCTTGCGCGG CGCCAACCTC ATCGACGCCA ACTTCTCGAA GGCCGTCTTC
GTGCAGGCCG ACCTGAGCGG CGCCAACCTG TTTCGCACCG ACGTGTCGCA AAGCCTGATC
GACGGCAGCA CCCACCTGCT CGGCGCCTAC ACACGGCACG CCAAGACCTG GCCCGCACGG
CGCGCCGCAG CGCCCGAATG A
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| Protein sequence | MKTVKPLRLG ILTRPYRWQG VDQLGVAVTA FASLEAEPKL MADQELWQTV GEEIGGLGVF
DAGVPKCMPE VLASGHGYTH HQQDKTACAV RLRVADLEKS LHVSGDRYWL DGRLTAPQPF
EAMPLDWAHA YGGPGVPENP AGIGAFDELI NGVRTRRAPN VEAVHARVRS RGQAVAPASF
GAVPIDSPQR MALMGSKFGQ HWLEHHFPGF AQDMDWRFFN AAPEDQRWPA RQELPPGAPY
EILNMHPEKP VLSGRLPDWR ARCFASFDKE GRGLHEIGLR LTTAWFFPHR ERVALIWHGV
RPVREDDAAD VRHIMPALEL PQEPRELAHY QSVLLQRLDT ARGGLLAFRD SDLAPKAVLG
RWGILDAPDP MARPLLRNLR AGQQRDHESR RAELVALGVD PDKYLPAPQP PAAPLEFDDV
PEYFERMQGE MMEARKNLQA QGEQMRRRQE EELDPALLQK SREQPQRFDP DALIRQLEQL
AAAPPAGTPA SPPPTLISLG TKDRMTAQIR QGYLHGAHLS DAAPPMPSFR AAKIRRRLAE
AAPGARNFSG MRLVGADLSD MDLRGADFSG AALEDANLDN AQLSDANFNG AVLARARLSR
TSLASATFRN ANLGGAHCEF ADFSGADLSS ANCEKTRFAS CSMANTVLDQ TRFTASEMSH
CDFRGSDWHQ VFLTKLRMSG MAFDGASFQQ VVWLECTLAD VRFANASLVR CSFVTSDCSR
SVDFSDARLD ACSFAHGSTL AGAVLRRAAL KQCGLRTTPL QQADLREARL DNCDFSECAL
QGAKLERLVA GESLFVRADL TGASLRGANL IDANFSKAVF VQADLSGANL FRTDVSQSLI
DGSTHLLGAY TRHAKTWPAR RAAAPE
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