Gene Vapar_3770 details

Gene Information

• Locus tag: Vapar_3770
• ID: 7970930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3987643
• End bp: 3988284
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644794357
• Product: hypothetical protein
• Protein accession: YP_002945652
• Protein GI: 239816742
• COG category: [R] General function prediction only
• COG ID: [COG3577] Predicted aspartyl protease
• TIGRFAM ID: [TIGR02281] clan AA aspartic protease, TIGR02281 family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGCCC TCGTCGTCGC AGCGCAGCTG CTGGCTGCCG CTGCCGGGGC GCATGCGGCC 
GGCTCCGTGA TGCTGACCGG CACCATCGGC AGCCGCGCGA TCCTGATCGT GAATGGCGCG 
CCGCCCAAGA CGGTGGCGGT CGGCGAGACC TTCCAGGGCG TGAAGCTGGT GTCGCTGCAG 
GCCGAGCAGG CGGTGGTCGA ACTCGAGGGC AAGCGCGTCA ACCTGCGCAT GGACACGCCG 
GTCAGCATTG GCGGCGGGGG AGGCACCGGT GGCGGCAGCC GCATCGTGCT GCCGGCCGAC 
AGCCGCGGCC ATTTCATGAC GCAGGGCGCC ATCAACGGCC GCCCCGTCAC CTTCATGCTC 
GACACGGGCG CCACTTCTAT CGCCCTGTCG GCCGACGATG CCCAGCGGAT CGGCCTGGAC 
TACAGCAAGG GGCAGCGCAT CCAGATGAGC ACCGCCAACG GCGTGTCCAG CGGCTACAAG 
CTGCGGCTGC AATCGGTGCG CGTGGGCGAC GTGGAGGTGT ACGACATCGA CGCCATCGTC 
TCGCCGCAGC CTATGCCCTT CGTGCTGCTG GGCAACAGCT TCATCAACCG TTTCTCGATG 
CGCCGCGACG CGGACCAGAT GGTCCTCGAA AAACGCTATT GA 

 

Protein sequence

MKALVVAAQL LAAAAGAHAA GSVMLTGTIG SRAILIVNGA PPKTVAVGET FQGVKLVSLQ 
AEQAVVELEG KRVNLRMDTP VSIGGGGGTG GGSRIVLPAD SRGHFMTQGA INGRPVTFML 
DTGATSIALS ADDAQRIGLD YSKGQRIQMS TANGVSSGYK LRLQSVRVGD VEVYDIDAIV 
SPQPMPFVLL GNSFINRFSM RRDADQMVLE KRY