| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3758 |
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| Symbol | |
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| ID | 7970918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3976573 |
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| End bp | 3977793 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794345 |
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| Product | O-succinylhomoserine sulfhydrylase |
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| Protein accession | YP_002945640 |
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| Protein GI | 239816730 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00999725 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGACG AACGAACCCT GCCGCCCGGG CTGCACCGCG ACACGCTCGC GCTGCGCACC
GGCCTGGCGC CGAGCCAGCA CGGCGAGCAC TCCGAAGCGC TGTTCCTGAC CAGCGGCTTC
GTGCAGCCCG ATGCCGAGAC CTCGGCGCGC CGCTTTGCCG GCACCGAGCA GGGCTTCACC
TACTCGCGCA CCTCCAACCC CACCGTCACC AGCTTCGAGC AGCGCCTGGC CGCGCTCGAA
GGCACGGAAG CCGCCATCGG CGCCTCCACC GGCATGGGCG CGATCCTCAT GATGTGCATG
GGCCTGCTCA AGGCCGGCGA CCACGTGGTG TGCTCGCGCT CGGTGTTCGG CTCCACGCTC
AACCTGTTCG GCAAGGAGTT TGCCAAGTTC GGCGTCGAGA CCACCTTCGT CTCGCAGACC
GACGTGGCCG AATGGCGCGC GGCCCTGAAG CCCAACACCA GGCTGCTGTT CGCCGAGACG
CCGACCAATC CGCTGACCGA GGTCTGCGAC ATCCGGACGC TGGCCGACCT GGCGCACGGC
GCCGGCGCGC TGCTCGCGGT CGACAACTGC TTCTGCACGC CCGTGCTGCA GCGCCCGGCC
GAACTGGGGG CCGACCTCAT CATCCATTCG GGCACCAAGT ACCTCGACGG CCAGGGCCGC
GTGATGGCCG GCGCGATCTG CGGCCCCTCC AAGCTCATCG TCGACGTGTT CGGCCCGGTG
GTGCGCACCG CCGGCATGGC GCTCTCGCCG TTCAACGCGT GGGTGGTGCT CAAGGGCCTG
GAAACGCTGG GCATCCGCAT GCAGGCGCAG TGCGCCAATG CGCTGGCTGT CGCGCAGTGG
CTCGAAACGC AGCCCGGCAT CGCACGCGTC TACTACCCCG GCCTGGCCTC GCACGCGCAG
CACGAACTGG CCATGCGCCA GCAGTCGGGG CAGGGCGGGG CGGTGCTGTC GTTCGACGTG
GTCGGCGACA CGCCCGAGGT GGCGCGCGCC AATGCCTTCC ACGTGATCAA CAGCACGCGC
GTGGTGAGCA TCGCCACCAA CCTGGGCGAC ACCAAGACCA TCATCACGCA CCCCGGCACC
ACCTCGCATG GCCGCCTGAC CGAAGCACAG CGCCAGGCCG CCGGCATCAG CCAGGGGCTC
ATCCGCCTCG CGGTCGGCCT GGAGCACATC GACGACATCA AGGCCGACCT GCTGCGTGGC
CTGGGCACCC TGAAATCCTG A
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| Protein sequence | MTDERTLPPG LHRDTLALRT GLAPSQHGEH SEALFLTSGF VQPDAETSAR RFAGTEQGFT
YSRTSNPTVT SFEQRLAALE GTEAAIGAST GMGAILMMCM GLLKAGDHVV CSRSVFGSTL
NLFGKEFAKF GVETTFVSQT DVAEWRAALK PNTRLLFAET PTNPLTEVCD IRTLADLAHG
AGALLAVDNC FCTPVLQRPA ELGADLIIHS GTKYLDGQGR VMAGAICGPS KLIVDVFGPV
VRTAGMALSP FNAWVVLKGL ETLGIRMQAQ CANALAVAQW LETQPGIARV YYPGLASHAQ
HELAMRQQSG QGGAVLSFDV VGDTPEVARA NAFHVINSTR VVSIATNLGD TKTIITHPGT
TSHGRLTEAQ RQAAGISQGL IRLAVGLEHI DDIKADLLRG LGTLKS
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