| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3744 |
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| Symbol | |
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| ID | 7970901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3953157 |
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| End bp | 3956489 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794328 |
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| Product | amino acid adenylation domain protein |
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| Protein accession | YP_002945626 |
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| Protein GI | 239816716 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
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| TIGRFAM ID | [TIGR01720] non-ribosomal peptide synthase domain TIGR01720
[TIGR01733] amino acid adenylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.696362 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGA TACCGAACCT TTCCGAACGA CGCGCCAGGC TGACGCCCGC GCAACTGAGC
CTGCTGCAGC AGCGCCTGAA GCGCGACGCG GCCCCGGCGC CGGCGCGCGC GGCGATCGTG
CGCGGCCAGG ACGATGGCGC CGCGCCCGTA TCCTTCGCGC AGCAGGGGCA GTGGTTCCTG
TGGCAGTTGA ACCCGGGCAA CACCGCCTAT CACGTCGGCG GCGGGCTCGG CTTCTCGGGG
CCGCTCGACG TCACCGCCTT GCGCGAGGCC GTGCAGGCGC TCGTGGCACG GCACGAGGCG
CTGCGCACCG TCTTCCGGCC GGGGGAGGGT GGGTTGCCCG AGCAATGCGT CCAGGCGGCG
GTCGAGATCG GGATTCCCTT CATCGACCTG GCCGCGCTCG ACGCAGCGGC GCGTGAATCG
CGCCATGCCG AGGTGGTGGC GGACGCCTGC CGCACACCCT TCGAGCTGAG GGCAGGCCCC
TTGCTGCGCG GCACGCTGTT GAAGATGGCG GACGGCGAGC ACCAGTTGCT CCTGATGATG
CATCACATCA TTTCCGACGC CTGGTCGGTC GAGCTGATGC TCGACGAGCT GGCGCAGCTT
TATGCGATGC GCGTTCAAGG CTTGCCGGCA TCGCTGCCGC AGCCGGAGAT CCGCTATGTC
GACTTCGCCC GCTGGCAGCG CAAGTGGCTG GACGACGGCG AAGGCGAGCG CCAGCTCGCC
TACTGGCGCG GCCGGCTCGG CGACAGCCAC CCGGTGCTCG CGCTCGCCAC CGACCGGCCG
CGCTCCGCCG AGGCGGACTA CAGCGCGGCG CAGCAGACGC TGGACGTACC CGCCAAGCTC
GTGGAGGCGC TGAAGCGCCA ATCCCGCGAG CAGGGCGGCA CGCTGTTCAT GGCCTTGCTC
ACTGCGTTCC ATGCCCTGCT GTTCCGCCAC ACCGGGCAGC AGGCGATCCG CGTCGGCGTG
CCGGTGGCGG GGCGCGGCCG GCCGGAGGCC TCGGGTGTCA TCGGCGCCTT CATCAACACC
GTGGTGCTCG ATGCGCGCAT GCACGGGCAG ATGCGCCTGG CCGACCTGCT GCTGCAGGTG
CGTGATGTGT CGCTCGAGGG ACAGGCGCAC CAGGACCTGC CGTTCGAGCG GCTGGTGCAG
GCCCTGCGGC CCGAGCGCGG GCATGCGGGC TCGCCGCTGT TCCAGGTGAT GTTCAACCAT
CTTGGCCAGG GCGACCGGCC GTTGCAGGGC TGGCCCGGAC TGCGCGTGCG CCGGATCGAC
CTCGCCCAGC GCGCCGCACC GTTCGAGCTC ACGCTGGAAA CCATCGAGCG CGCGGACGGC
AGCATCCAGG CCGACTTCCG CTATGCGGCC GAGCTGTTCG AGCCGCAGAC CATCGAGCGG
CTTGCAGGCC ACTACGGCCG CGTGCTCGAA GCATTGGCCG CGCGGCCCGC ATCGACGCTC
AACGAGCTCG ACCTGCTGGG CTCCGAAGAG AAGGCGCAGC TTGGCCAGTG GAGCATCAAC
ACGCACAGCC ACGGCGAGGC CGTGCCGGTG CACCGCCTCA TCGAACAGCA GGCGGCCCGA
CATCCGGATG CGGTCGCGGT GCTCTTCGGC GATGCATCGC TCAGCTACGG CGAACTCAAC
CGCCGCGCCA ACCAGCTCGC GCACCGGCTG ATCGAAGAGG GCGTGGGCCC CGAGGTCAAG
GTGGGCGTTG CGCTGGAGCG CAGCCTGGAA TTGGTGACCG GCCTGCTCGC GGTCCTGAAG
GCCGGCGGCG CCTACGTGCC GCTGGACCCC GAGTACCCGG CGGAGCGCAT CGCCTACATG
GTCGAAGACA GCCAGCTCGG CCTCGTGCTC ACGCACAGCA GCCTGGCCGA TCGCCTTGTG
CTGCCAGCCA GCGTCGCGGC GCTCGCGCTC GACACGCTGG ATCTCGAGGG CATGGCGCAG
ACCGACCCCG TGGTCGCACT CAGCGGCGAA AACCTCGCCT ATGTGATCTA CACCTCGGGC
TCCACCGGCC GCCCCAAGGG CGCGGCCAAC CGGCACGCCG CATTGCACAA CCGGCTGGCG
TGGATGCAGG CGGCCTACCC CATCGATGGC GCGGACACCG TGCTGCAGAA AACGCCGTTC
AGCTTCGACG TGTCGGTGTG GGAGTTCTTC TGGCCGCTCA TGGCCGGTGC GCGGCTGGCC
GTGGCGGCAC CCGGCGATCA CCGCGAGCCC GCACGCCTTG CACATCTGAT CCAGCGCCAC
GGCGTGAGCA CGCTGCACTT CGTGCCCTCG ATGCTGCAGG CCTTCCTGGC GCACGATGGC
ATCGAGGCCT GCACCAGCCT GCGGCAGATC GTCTGCAGCG GCGAGGCATT GCCCGCCGAG
GCGCAGCTGG GTGTCTTCCA GCGCCTGCCG CAAGCGGCGC TGCACAACCT CTATGGCCCC
ACCGAGGCGG CCATCGACGT CACGCACTGG ACCTGCCGCA GCGACGGCCG CAGCCAGGTG
CCGATCGGCC GGCCGATTGC CGGCACGCAG GCCTTCGTGC TCGATGCCGA CCTGAACCTC
GCGGCGCCCG GAGTGGCTGG CGAGCTCTAC CTGGGCGGCA TCGGGCTTGC GCGCGGCTAT
GTGGAGCGCG CGGGGCTCAC CGCCGAGCGC TTCGTGGCCG ACCCCTTCGG CTTGGCCGAG
GGCGCGCGCC TCTACCGCAC GGGCGACCTC GTGCGATGGA ACAGCGAAGG GCAGCTCGAC
TACCTGGGGC GCATCGACCA CCAGGTGAAG ATCCGCGGTT TTCGTATCGA ACTCGGCGAG
ATCGAGGCCC AACTGCTCGT GCAGCCCGAA GTGCGCGAGG CCGTCGTCGG CGCGAGCCAG
GGGCCGGCGG GTGCGCAGCT CGTGGCATAT GTCTCGCCGC AGGCGGGACA GGCCGTCGAT
GCCGCGCAGC TGCGCGAACG CCTCGGCCGC GTGCTGCCGG ACTACATGGT GCCGGCGCTC
GTCGTTGAGC TGGACAGCTT GCCGCTCAAC CCGAACGGCA AGGTGGACCG CAAGGCGCTG
CCGCCGCCCG AGCTGGCGAG CGCGCGCGTC TACGAAGCAC CGCAGGGCAA GGTGGAAGAA
GCGCTCGCCG CGATCTGGGC CGAAGTGCTC GGCGTGGCGC GCGTCGGCCG CCACGACAAC
TTCTTCGAGC TCGGCGGCCA TTCGCTGATG TCGGTGCAGG TGGTGGCCCG CGTGCAGGGC
GCGATGCACG CGGAGCTCTC GGTGAAGGAC GTCTTCCAGC ACCCGGTGCT CGCCGCCATG
GCGGGCCTCG TTGCCGCGGC GGCGGCCAGA AAGCCCGTCG CCCAATCCCT TTCGGACATT
GATTCCTTCA TCGACAGTCT GGAGATCGCT TGA
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| Protein sequence | MSEIPNLSER RARLTPAQLS LLQQRLKRDA APAPARAAIV RGQDDGAAPV SFAQQGQWFL
WQLNPGNTAY HVGGGLGFSG PLDVTALREA VQALVARHEA LRTVFRPGEG GLPEQCVQAA
VEIGIPFIDL AALDAAARES RHAEVVADAC RTPFELRAGP LLRGTLLKMA DGEHQLLLMM
HHIISDAWSV ELMLDELAQL YAMRVQGLPA SLPQPEIRYV DFARWQRKWL DDGEGERQLA
YWRGRLGDSH PVLALATDRP RSAEADYSAA QQTLDVPAKL VEALKRQSRE QGGTLFMALL
TAFHALLFRH TGQQAIRVGV PVAGRGRPEA SGVIGAFINT VVLDARMHGQ MRLADLLLQV
RDVSLEGQAH QDLPFERLVQ ALRPERGHAG SPLFQVMFNH LGQGDRPLQG WPGLRVRRID
LAQRAAPFEL TLETIERADG SIQADFRYAA ELFEPQTIER LAGHYGRVLE ALAARPASTL
NELDLLGSEE KAQLGQWSIN THSHGEAVPV HRLIEQQAAR HPDAVAVLFG DASLSYGELN
RRANQLAHRL IEEGVGPEVK VGVALERSLE LVTGLLAVLK AGGAYVPLDP EYPAERIAYM
VEDSQLGLVL THSSLADRLV LPASVAALAL DTLDLEGMAQ TDPVVALSGE NLAYVIYTSG
STGRPKGAAN RHAALHNRLA WMQAAYPIDG ADTVLQKTPF SFDVSVWEFF WPLMAGARLA
VAAPGDHREP ARLAHLIQRH GVSTLHFVPS MLQAFLAHDG IEACTSLRQI VCSGEALPAE
AQLGVFQRLP QAALHNLYGP TEAAIDVTHW TCRSDGRSQV PIGRPIAGTQ AFVLDADLNL
AAPGVAGELY LGGIGLARGY VERAGLTAER FVADPFGLAE GARLYRTGDL VRWNSEGQLD
YLGRIDHQVK IRGFRIELGE IEAQLLVQPE VREAVVGASQ GPAGAQLVAY VSPQAGQAVD
AAQLRERLGR VLPDYMVPAL VVELDSLPLN PNGKVDRKAL PPPELASARV YEAPQGKVEE
ALAAIWAEVL GVARVGRHDN FFELGGHSLM SVQVVARVQG AMHAELSVKD VFQHPVLAAM
AGLVAAAAAR KPVAQSLSDI DSFIDSLEIA
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