| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3742 |
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| Symbol | |
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| ID | 7970899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3941204 |
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| End bp | 3945280 |
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| Gene Length | 4077 bp |
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| Protein Length | 1358 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794326 |
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| Product | amino acid adenylation domain protein |
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| Protein accession | YP_002945624 |
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| Protein GI | 239816714 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
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| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.798811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTGG AAATGACCGC GCTGTCGCGC CGCTTCGCTG CCTTGCCGGC GGCCAAGCAG
CGCGTGTTTC TCGAGAAGCT GCGCGCGAGC GGCGTGGGCT TCGACGCGCT GCCCATCGTG
CCGCGCGATC CCGCGGCGCC GGTGCCGATG GCCTATGCGC AGCGCGCTCT GTGGCTGGTG
TGGCAGCGCG CGCCACAGTC GCCGGCGTAC AACCTGTCGG GGCGGCTGGC GCTGCCCCTG
TCGTGCACGC CGCAGCAGGT GCAGGCCTGC CTGGCCCAGC TGGTGGCGCG GCACGAGGTG
CTCTGCACCA CCTACCCGGC CGGCGCCGAA GGGCAGCCGC TGCAGCACAT CGACCCCGGG
CATCGCTTCG GTTGGGCGGT GCGCGAATGG ACTGGCTCGC GCGCGGACAG TGAGCGCGAG
CTTGCGGCTG CCGCCACCGG GTTTGGCGCG CGGCCGTTCG ACCTGGAGCG CGGACCTGTC
TTCCGCGGTG AACTGAATCT CTTTGCCGAT GGCGCGCCCG AGCTCTTTCT CGCGGTGCAT
CACATCGCGG CCGACGGCCA ATCGGTGGCG CTGCTCGTCG CCGAACTGCA GGCGCTGCTC
GCGGCGCCTG CAGCGAGCAC TCAGCCTGCG GCACCGGCCC TGCAGTACGC CGACTACGCC
GTGTGGCAAC GCCAGTGGCT CGAAGCCGGC GAACTCGAAA GGCAAACCGC CTACTGGCGC
GAACAGCTGC GGGGTGCGCC GCAAAGCACG CCGCTGCCGC TGGACCGTCC GCGCCAGAAG
GCGCGCGATG CGCGCGGTGG GCAGATCAAC TTCGCGCTGC CGCCCGATGT GTCGCAGCGC
CTGAAGGAGC TGGCGCGCAA GCACGCCGCA TCGCCGTACA TGGTGGCGAT CGCGCTGCTC
GGCCTGCTGG TCTACCGCTA CTGCGGCGAG CGCGACGTGT GCATCGGCTC GCCATCGGCC
ACGCGCGACC GCCCCGAGCT GGCCGCCCTG GTGGGCCATT TCACCAACGT GCTGGTGCTG
CGCATGAAGG TGGACCCCGC GGCTGGCTTC GTCGCGCTGC TGTCGCAGGT GCGCGAGCGC
GTGCTCGAAG CCAAGAGCCA CCAGGACCTG CCGCTGGACA TGCTCGTCGA GGCGCTGGCG
CTGGAGCGCA CGCCGGGCTT GCATCCGCTG TTCCAGATCA AGTCGACGCA GCAGGCGGCG
GGGGCGGTAC CCGCCGATCC GGCCGCTGCC GCGCACGGCA TCGGCGTGGA CGAAGTGCAC
TTCGACCTGA GCTTCGACCT GGTCGACACC GGCAGCGCGC TGTCCTTCGT TCTCGCGTAT
GCCGCGGACA TCTTCGACCA CGCGACCATC GAGCGGCTGG CCGATGCGCT GCGCAGCCTG
GCCGGGCAGG TCGCGGCCGA TCCAGCGCGC GCGTTGGCCG CAACGCAACT GGCCGGCGAT
TCGAGCCTGC GCGGCGAGTG CGCATCCTCG CCTGCCGACA ACGTGCTGTC GCTGTTCGAC
CAGGCGGCCG CAAGGCGTGG CGGCGCGACG GCGCTCTCCT TCGGGGACCG TGCGCACAGC
TTCGATGAAC TGGCGCGCGC GGCCGGCCAC TGGGCCGCCG AGCTCGAAAG CCGCGGCATT
GGTGCCGAGC AGCGCGTGGC CGTCTGCATG GAGCGCACGC CCGAGTTCGT GCTGGCGGTG
CTGTCGGTGC TGAAGGCCGG CGGCGCCTAC GTGCCCATCG ACCCGACGCT GCCGCAGCAG
CGCATCGACG AGCTGCTGGC CGATTGCGGC GCCGCGCTGG TGCTGGTGTC CGGCGGCAAG
CCGCGGCAGG CCGCGCTGCC GTGCATGCGG GTGGGCTTCG ACGTGCCGGG CGGCTTCTTG
CCGCATCGCG CGCGTGCGAT GCACCCCGCG CAGGCGGCCT ACCTGATCTA CACCTCCGGA
TCGACCGGCC GGCCCAAGGG CGTGGTCGTT CACCACGGCG CGTTGGCCAA CTATGTGCAG
GGCGTGCTCG CGCGGCTGGC GCTGCCCGAG GGCGAGAGCT TCGCGATGGT CTCCACCGTC
GCGGCGGATC TTGGCCATAC CTCGTTGTTC GGTGCGCTGT GCTCGGGTGG TGCGCTGCAC
CTCGTCTCGA GCGAGGCGGC CTTCGATCCC GATGCGTTTG CGGACCGCAT GGCGAAGACG
CGCGCCGGCG TGCTGAAGAT CGTGCCCAGC CACCTGAAGG GCCTGCTGAA CGCGCAGCGC
GCGGCCGCGG TGCTGCCGTC GCACGCGCTC GTGCTGGGCG GCGAGGCGAC GGACGCGGCA
ACGCTGCAGG CCATTCGCGC GCTGCGGCCG GACCTGCGCA TCTTCAACCA CTATGGGCCG
ACCGAGACCG CGGTCGGCAT GCTGACGCAT GCCGCGCCGG CGCAGGCTGG CGATACCGGC
AACCTGCCCC TGGGCAAGCC GATCGCGAAC ATGGACGCCT GGGTGCTCGA CGACGCATTG
CAGCCCGTGC AGCCCGGCAT GGCGGGCGAG CTCTACATCG GGGGTGCCGG CGTGGCGCGC
GGCTATCTTT CGCGCGCCGG TCTTTGCGCC GATCGCTTCG TTGCCTCGCC CTTCGGCGAC
GGGCAGCGCA TCTACCGTGC GGGCGACCGC GTGCGCCAGC GCAGCGACGG CACGCTGGAG
TTTCTCGGCC GCAGCGATGA CCAGGTGAAG ATTCGCGGCT ACCGCGTCGA GCCGGGCGAA
GTGGCGGGCC GCATCCGCGA GCTCGATGGC GTGGCCGATG CCGTGGTCGT CGCGGAGCAG
GGCGCGCAGG AGAGCGCGGT GCTGCGCGCC TACGTGGTCG CCAGGCCGGG CACTTCGCTC
GATGTGGAAG AGCTCCGGCA CGCGTTGGCG GACAGCCTGC CGGCGTGGAT GGTGCCCGAG
CGCATCGTGC TGCTCGACGC GCTGCCGCTC ACGGCCAACG GCAAGATCGA TCGCAAGGCG
CTGCCGCGCC CGGCGCAGCC CGAGCCCGCG CGCGGTTTCG ACGCCCCGCA GGGCCCGACC
GAAGAGGCGC TGGCCCGCAT CTGGAGCCAG GTGCTCGGCG TGGACCGCAT TGCGCGTGGC
GACAACTTCT TTGCGCTGGG CGGCGACTCC ATCCTGAGCC TGAAGCTGGT GGCGCGCATC
CGCAAGCAGT TGCCCGGCGG CGGCCAGCTG AGCCTGCCGG ATGTGATGCA GGCCAGCAGC
CTCGGCAGCC TCGCCGAGCG GCTGCGGCAG AAGTTCGAGG GTTCGCACGA TGCCGTCTGC
CTGAGCGCGA GCGGCACCGG CGTGCCGCTG TTCTGCCTGC CGGGCCTCAT CGTGAACACG
CGCGAGTTCC TGCCGCTCGC AGAGGCGCTG CAGGGCGAGC GCGTGGTGTA CGGCTTCGTG
AGCCACGTCT ACACGCGCAA GCGCTGGCGC GGTTTCGACC TGCAGGCGCT GGCCGCCGAG
TACGCGAGCT TCATCCTCGC CACGGCCACC GAGGGGCGCT GCGCGCTGCT GGGCTGGTCG
TCGGGCGGCG ACCTGGCCTT CGAGCTTGCG CGGCAACTGC AGGGGCGCAT CGAGATCGTG
TTCACCGGCA TGCTGGACGT GTTCGAGACC CCGCCGCTGC GCGCCTCGGC GCCGCTCGGC
GCCGCCCGGC GTGCCCAGGC CGACGAGGTG CTCGCGCAGT GGCTGGGCCG CTCGGAAATG
GCCGCTCACT GGAAGGCGCT GTTCGCCCGC ATGGACGGCG AGGAGCTTGC CTGGGTGGCC
GAGCAGGTGC TGAACCCGGC GCAGCCGCTG CCGCTCGACG GCACCGGCGA CGAGGCGGCC
GAGTACCTGC TGTGGGCGAC GATCGACAAG CGCGTGCAGG CCGCGCGCTA CACCTGCGCG
CGGTCGCCGC TGCCGCTGCA CGTGTTCCTC GCGGACAGTT CGCTGCGCCG CGAGGAGACG
CTGCGCAACT GGGCCGACCA CGCGCCGGTG GTGTCGGCCG AAGTGCTGCC GCAGGCCGAT
CACCTGGACA TCGTTCGCCA TCCCGCGCTG TGCGCTTCGC TGAAGGGGCT GCTGCGCGGG
GCCGATGCGG CGCATGGCGC CGTGCAGGCA GCCCAGTCCG CGGCCTACCA GCGGTAG
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| Protein sequence | MSLEMTALSR RFAALPAAKQ RVFLEKLRAS GVGFDALPIV PRDPAAPVPM AYAQRALWLV
WQRAPQSPAY NLSGRLALPL SCTPQQVQAC LAQLVARHEV LCTTYPAGAE GQPLQHIDPG
HRFGWAVREW TGSRADSERE LAAAATGFGA RPFDLERGPV FRGELNLFAD GAPELFLAVH
HIAADGQSVA LLVAELQALL AAPAASTQPA APALQYADYA VWQRQWLEAG ELERQTAYWR
EQLRGAPQST PLPLDRPRQK ARDARGGQIN FALPPDVSQR LKELARKHAA SPYMVAIALL
GLLVYRYCGE RDVCIGSPSA TRDRPELAAL VGHFTNVLVL RMKVDPAAGF VALLSQVRER
VLEAKSHQDL PLDMLVEALA LERTPGLHPL FQIKSTQQAA GAVPADPAAA AHGIGVDEVH
FDLSFDLVDT GSALSFVLAY AADIFDHATI ERLADALRSL AGQVAADPAR ALAATQLAGD
SSLRGECASS PADNVLSLFD QAAARRGGAT ALSFGDRAHS FDELARAAGH WAAELESRGI
GAEQRVAVCM ERTPEFVLAV LSVLKAGGAY VPIDPTLPQQ RIDELLADCG AALVLVSGGK
PRQAALPCMR VGFDVPGGFL PHRARAMHPA QAAYLIYTSG STGRPKGVVV HHGALANYVQ
GVLARLALPE GESFAMVSTV AADLGHTSLF GALCSGGALH LVSSEAAFDP DAFADRMAKT
RAGVLKIVPS HLKGLLNAQR AAAVLPSHAL VLGGEATDAA TLQAIRALRP DLRIFNHYGP
TETAVGMLTH AAPAQAGDTG NLPLGKPIAN MDAWVLDDAL QPVQPGMAGE LYIGGAGVAR
GYLSRAGLCA DRFVASPFGD GQRIYRAGDR VRQRSDGTLE FLGRSDDQVK IRGYRVEPGE
VAGRIRELDG VADAVVVAEQ GAQESAVLRA YVVARPGTSL DVEELRHALA DSLPAWMVPE
RIVLLDALPL TANGKIDRKA LPRPAQPEPA RGFDAPQGPT EEALARIWSQ VLGVDRIARG
DNFFALGGDS ILSLKLVARI RKQLPGGGQL SLPDVMQASS LGSLAERLRQ KFEGSHDAVC
LSASGTGVPL FCLPGLIVNT REFLPLAEAL QGERVVYGFV SHVYTRKRWR GFDLQALAAE
YASFILATAT EGRCALLGWS SGGDLAFELA RQLQGRIEIV FTGMLDVFET PPLRASAPLG
AARRAQADEV LAQWLGRSEM AAHWKALFAR MDGEELAWVA EQVLNPAQPL PLDGTGDEAA
EYLLWATIDK RVQAARYTCA RSPLPLHVFL ADSSLRREET LRNWADHAPV VSAEVLPQAD
HLDIVRHPAL CASLKGLLRG ADAAHGAVQA AQSAAYQR
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