Gene Vapar_3729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3729 
Symbol 
ID7970886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3928082 
End bp3928735 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content67% 
IMG OID644794313 
Productprotein of unknown function DUF1345 
Protein accessionYP_002945611 
Protein GI239816701 
COG category[S] Function unknown 
COG ID[COG4291] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAAA GTCTGTCCAC CACCACCGGG CCGCAGCGTC TTCTCTATGC CGGCGTGGCG 
GGCATCGCCG TTGCGGCCAT CCCTTGGCCG CTCGACGCCA TGGCGCGCGG GCTCGCGGGC 
TGGTGCACCA GCGCGGCGGT GTTCCTGCTG CTCACGTGGT GGCTGGCCGA CACCTTCGAT 
GCGGCGCAGA CCCGCAAGCG CGCCCAGTCG CTGGACCAGC CCAACGTGGT GATCCTGGTC 
TCGATGCTGG TGGTCATTGC GGCGAGCGTG GTGGCCATCG CGATGCTGCT GCAGCAGGTC 
AAGCTGATGA GCGGGCCGGC GCGGGCAGGC CACATCGCGC TGGGGCTGGT GGCGCTGGTG 
GGCTCGTGGC TCATGATGCA CACGATCTAC GCCTTTCACT ACGCGCACCG CTACTACATC 
GACCAGCGCG ACGGTTCGCC CGACGGCGGG CTGGATTTTC CGGGCAAGGA AGAGCCGGAC 
TATTTCGATT TCCTGTACTA CGCCTACGTG GTCGGCATGA CCACGCAGGT GTCCGACGTG 
CAGGCCACCT CGCGCGAGAT GCGGCGCATC ACGCTGGTGC ACAGCGTGCT CGCCTTCGCC 
TTCAACATGC TGGTGCTCGC GCTGTCGGTC AACGTGGTCG CGGGGGCGAT GTAG
 
Protein sequence
MPKSLSTTTG PQRLLYAGVA GIAVAAIPWP LDAMARGLAG WCTSAAVFLL LTWWLADTFD 
AAQTRKRAQS LDQPNVVILV SMLVVIAASV VAIAMLLQQV KLMSGPARAG HIALGLVALV 
GSWLMMHTIY AFHYAHRYYI DQRDGSPDGG LDFPGKEEPD YFDFLYYAYV VGMTTQVSDV 
QATSREMRRI TLVHSVLAFA FNMLVLALSV NVVAGAM