| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3728 |
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| Symbol | |
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| ID | 7970885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3927133 |
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| End bp | 3928107 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794312 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002945610 |
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| Protein GI | 239816700 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.952098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA CAACAAAAGA CAACAGCACC ACCGCCCTTC CCTCGCCCAA GCCCAACAAG
CCCTGGCTCA TCGACCTCGT GCTGCTCGGC GCGCTCTGGG GGGCGTCCTT CCTTTTCATG
CGCATCGGCG CGGCCGAGTT CGGCGCCTTG CCGGCGGCCG CGGTGCGCGT GGCGGTGGCC
ACGCTGTTCC TGCTGCCGCT CCTGTTCATG CGCGGCCACG GCGCGGCGCT GGCGCAGCAC
TGGAAGGCGT CGATGGCCAT CGGCGTGCTG AATTCGGGCA TTCCGTTCGC GCTGTTCTGC
TTTGCGCTGC TGACCATCAA CAGCGGCCTG GCGGCGGTGA TCAATGCCAC GGTGCCGATG
TTCGGCGCGC TGGTGGCCTG GGCCTGGTTT CGCGACCGGC CCGATGGCTC GCGCATCGTG
GGCCTGGTCA TCGGCTTCGC GGGCGTCGCC ATGCTGGCGA GCCGCAGCGC GGGCCTGCAT
GCCGACGCCA ACGGCAACGC CGCGCTATGG GCCGTGCTGG CCTGCCTCGG CGCCTGCGCC
AGCTACGGCG TGGCGGCCAG CGCCACACGG CGCTACCTGG GCGGCGTGCC CGCGCTGGCC
ACCGCCACCG GCAGCCAGAT CGGCGCCACG CTGTTCCTTG CGCTTCCGGC GCTGTGGTTC
TGGCCCGCGC AGATGCCGAG CCTGCGCGCC TGGCTGGCAT TGCTGGCCCT GGGCATCGCA
TGCACCGGCC TTGCGTACAT CCTGTTCTTC CGGCTCATCG CCAATGCGGG ACCGGCGCGC
GCGCTCACGG TGACTTTCCT GGTGCCGGTG TTCGCGGTGT TCTACGGCGC CGTGTTCCTG
GGCGAGAACA TCACGCAATG GATGCTGATC TGCGCGGGCG TGATCGTCTG CGGCGTGGCG
CTCTCCACCG GCATCGTGAA GCTGTGGCCG CGCGCGGGCG GCGCGGCCGC TACATCGCCC
CCGCGACCAC GTTGA
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| Protein sequence | MSTTTKDNST TALPSPKPNK PWLIDLVLLG ALWGASFLFM RIGAAEFGAL PAAAVRVAVA
TLFLLPLLFM RGHGAALAQH WKASMAIGVL NSGIPFALFC FALLTINSGL AAVINATVPM
FGALVAWAWF RDRPDGSRIV GLVIGFAGVA MLASRSAGLH ADANGNAALW AVLACLGACA
SYGVAASATR RYLGGVPALA TATGSQIGAT LFLALPALWF WPAQMPSLRA WLALLALGIA
CTGLAYILFF RLIANAGPAR ALTVTFLVPV FAVFYGAVFL GENITQWMLI CAGVIVCGVA
LSTGIVKLWP RAGGAAATSP PRPR
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