| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3723 |
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| Symbol | |
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| ID | 7973956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3920561 |
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| End bp | 3922099 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794307 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_002945605 |
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| Protein GI | 239816695 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTTCA GGCCCAGGCT TTTGCCTCTT TCCGCAGCGC TCGCAAGTCT CTTTGCCACC
CTGCTCGCGC TGCCGGCCCA AGGCCAGACA CTGAACGAAC TCTACGAATC CGCACGCGGC
TTCGACGCCA CCTACCAGGG CGCGCGGGCC CAGTACGACG CGAGCGTGGC GCGCGCCGCG
CAGGCCAAGG CCGGCATCCT TCCAGCCGTG GGGCTCACGG CCGGCGTCAC GCGCAACAAC
CTGGACATCG ACACGCTCAC CGGCGCCGGC CGCGGAACGA CCACGCCGCG CGACTTCACC
ACGCAGAACA TCGGCATCAA CGCCACGCAG CCGCTGTACC GGCCCGCCAA CTGGGCCACC
TATGAGCAGG GCAAGCGCCA GGCCGAGATC GCGCAGTCGG TGCTCATCAT TGCCGAGCAG
GACCTGATCG TGCGCGTGAG CCAGGCCTAC TTCGACGTGC TCGCAAGCCA GGACAGCCTG
ACGCTGGTGC GCGCACAGAA GGTGGCGGTG GCCGAGCAGC TCGCGTCGGC CAAGCGCAAC
TTCGAGGTCG GCACCTCCAC CATCACCGAC ACGCGCGAAG CCCAGGCCCG CTACGACCTG
GTCATTGCGC AGGAGATCGC CGCCGAGAAC GACCTGCAGG TCAAGAAGGT GGTGCTCGAC
CAGCTGGTCG GCCGCCCGGG CAGCGTGCCG GTGCCGCTGG CGCAGCCGGT GGTGCTGCCG
ACCGCCACGC CGGCCAACAT CGAAGCCTGG GTGGCGCAGG CCGAGGAAGC GCACCCGGCC
ATCCGCCAGG CGCAGCTCGG GCTCGACGTG GCCGGGCTCG AAATCCGCAA GGCCGAAGCC
GGCCACAAGC CCACGCTCGA CGCCAACCTG GGCTACAACG TCACGCGCAA TCCGCAGGGC
ACCAGCACCA GCACCGTGGG CACGCGCATC GATGCCGCCT CGGTCGGCGT GGTGTTCAAC
CTGCCGCTCT TCGCGGGCTT TGCCACCGAG AACCGCATCA AGGAAACGCT GGCCCTCGAG
GACCAGTCGC GCAGCGTGCT CGAAGGCACC CGCCGCAGCG TCGCGCAGGC CACGCGCGCG
GCCTACCTCG GGCTGGTGTC CGGTGCGGGC CAGGTCAAGG CGCTCGAGGC GGCCGAGGCT
TCGAGCCAGA GCGCGCTCGA CGCCAACCGG CTCGGCTACC AGGTGGGCGT GCGCATCAAC
ATCGACGTGC TCAATTCGCA GAGCCAGCTC TACCAGACCA AGCGCGACCT CGCGCAGGCG
CGCTACAACG TGCTGCTGGG CAACCTGAAG CTGCGCCAGG CCAACGGCAC GCTGACGGTC
GACGACATGA ACACGATCAA CGCGACGCTG GCAAAGAACG GCAGCACGGC GGCAACGCCT
GCGCCCGGCG AACGGCCGCA GGCCGCGCCT TCGGTGCCCG TGACGCCGCC GCCCATTCCC
GTGGTGCCGC CGGTGCCGGT GCAGCCGTTC AATCCGCCGG CACCGACGAT GCCTTCGGCA
CCGCCGCCGC CGGTCATCCT GAACCCGCCG GTGCGCTGA
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| Protein sequence | MPFRPRLLPL SAALASLFAT LLALPAQGQT LNELYESARG FDATYQGARA QYDASVARAA
QAKAGILPAV GLTAGVTRNN LDIDTLTGAG RGTTTPRDFT TQNIGINATQ PLYRPANWAT
YEQGKRQAEI AQSVLIIAEQ DLIVRVSQAY FDVLASQDSL TLVRAQKVAV AEQLASAKRN
FEVGTSTITD TREAQARYDL VIAQEIAAEN DLQVKKVVLD QLVGRPGSVP VPLAQPVVLP
TATPANIEAW VAQAEEAHPA IRQAQLGLDV AGLEIRKAEA GHKPTLDANL GYNVTRNPQG
TSTSTVGTRI DAASVGVVFN LPLFAGFATE NRIKETLALE DQSRSVLEGT RRSVAQATRA
AYLGLVSGAG QVKALEAAEA SSQSALDANR LGYQVGVRIN IDVLNSQSQL YQTKRDLAQA
RYNVLLGNLK LRQANGTLTV DDMNTINATL AKNGSTAATP APGERPQAAP SVPVTPPPIP
VVPPVPVQPF NPPAPTMPSA PPPPVILNPP VR
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