| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3721 |
|---|
| Symbol | |
|---|
| ID | 7973954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3919509 |
|---|
| End bp | 3920186 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794305 |
|---|
| Product | Methyltransferase type 11 |
|---|
| Protein accession | YP_002945603 |
|---|
| Protein GI | 239816693 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2518] Protein-L-isoaspartate carboxylmethyltransferase |
|---|
| TIGRFAM ID | [TIGR00080] protein-L-isoaspartate(D-aspartate) O-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCA CCCCCTCCCT CGAGCGCCTG CGCTTCAACA TGATCGAACA GCAGATCCGG
CCCTGGGATG TGCTCGATCT GGAAATCCTC GACCTGCTGG CCGCCATCCG GCGCGAAGAC
TACGTGCCGC CCGCGCACCG CGCGCTGGCC TTCTTCGACA TGGAACTCCC GCTGGGCGAC
GGCTCGGTTC CCGGCCAGGT GATGCTCTCG CCCAAGGTCG AGGCGCGCAT GCTGCAGGAC
CTGCATGTGC AAAAGCACGA ATCGGTGCTC GAGATCGGCA CGGGTTCGGG TTTCATGGCC
GCCCTGCTCG CCCATCGCGC GGCCCAGGTG CTGTCGCTCG AGATCGATCC CGCGCTGGCC
GCCCGCGCCG CCGAGACGCT GCGCCAGAAC GGCGTGGCCA ATGTCGAGGT GCGCAATGCC
GACGGCGCCG TGCCGCTGCC GAGCGGCCCG AGCTTCGACG TGATCGTGCT CAGCGGCTCG
GTGGCGCGCA TTCCGCAGAA CCTGCTCGGC TCGCTCAAGG TGGGCGGCCG CCTTGCCGCC
ATCGTGGGCG AGGAGCCGAT GATGCGCGCC CACTTCGTCA CCCGCAGCAG CGAAAGCAAG
TGGGACACCA TCCAGCCCTG GGACACCGTG GCGCCGCGGC TGCTCAATTT CCCCGAGCCC
TCGCGCTTCT CGTTCTGA
|
|---|
| Protein sequence | MNPTPSLERL RFNMIEQQIR PWDVLDLEIL DLLAAIRRED YVPPAHRALA FFDMELPLGD
GSVPGQVMLS PKVEARMLQD LHVQKHESVL EIGTGSGFMA ALLAHRAAQV LSLEIDPALA
ARAAETLRQN GVANVEVRNA DGAVPLPSGP SFDVIVLSGS VARIPQNLLG SLKVGGRLAA
IVGEEPMMRA HFVTRSSESK WDTIQPWDTV APRLLNFPEP SRFSF
|
|---|
| |