| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3713 |
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| Symbol | |
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| ID | 7973946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3912093 |
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| End bp | 3912773 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794297 |
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| Product | pyridoxamine 5'-phosphate oxidase |
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| Protein accession | YP_002945595 |
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| Protein GI | 239816685 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
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| TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.589399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAACA ATGCCGGCAT GAGTTCTTCC TCTTCCCCTC CCACCAGCGA AGCGCTGGCC
GCGCTGCGCA AGAGCTACGA GCGCGCCGAA CTCGGCGAAA CCCACAGCGC CGACGATCCG
CTCAGGCAGT TCGAGCGCTG GCTCGGCGAA GCCATCGACG CGCAGGTGCC CGAGCCCAAC
GCGATGACGC TGTGCACCGT GGGCGGCGAC CTGCGGCCCT CGAGCCGCAT CGTGCTCATC
AAGGGCTATG ACGCGCGCGG CATCGTCTGG TACACCAACT ACGAAAGCCG CAAGGGCCGC
GAGCTTTCGG GCAACCCGTA CGCGGCCCTG CAGTTCCACT GGGTCGAGCT CGAACGCGTG
GTGCGCATCG AGGGCCGGGT GGAAAAGGCG AGCGCGCAGG AAAGCGACGC CTACTTTGCG
AGCCGCCCGC TCGATTCGCG CATCGGCGCC TGGGCCAGCC CGCAGAGCGA GGTGATCAGC
GGCCGCGACG TGCTGGTCAA GAACGCGGCC GTGGCCGCCG CCAGGCACCT GCTGTCGCCG
CCGCGCCCGC CGCACTGGGG CGGCTACCGC CTGGTGCCGG ACCGCTGGGA ATTCTGGCAG
GGCCGCAAGA GCCGCCTGCA CGACCGGCTG CGCTACCGGC TCGAAGGCGC CGACTGGGTG
CGCGAGCGGC TGGCGCCCTG A
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| Protein sequence | MRNNAGMSSS SSPPTSEALA ALRKSYERAE LGETHSADDP LRQFERWLGE AIDAQVPEPN
AMTLCTVGGD LRPSSRIVLI KGYDARGIVW YTNYESRKGR ELSGNPYAAL QFHWVELERV
VRIEGRVEKA SAQESDAYFA SRPLDSRIGA WASPQSEVIS GRDVLVKNAA VAAARHLLSP
PRPPHWGGYR LVPDRWEFWQ GRKSRLHDRL RYRLEGADWV RERLAP
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