| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3706 |
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| Symbol | |
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| ID | 7973939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3906156 |
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| End bp | 3906884 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794290 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_002945588 |
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| Protein GI | 239816678 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGCGG ATTTCGACGC CAGTGACCTG AAGGTCATTG CCTTCGACGT TTTCGGCACC
GTGGTCGACT GGCACAGCGG CATCGCGGCC GAGGCCGAGC GCGCATTGCC CGGTGTCGAC
GGCGCTGCCT TTGCGCTGGC CTGGCGCGCG GGCTACCAGC CCGCCATGAA GTCCGTGATG
GAGCGCATCG CGGCGGGCGA GGGCGGCTTC ACGCTGCTCG ACGAGCTGCA CCTGAGCATG
CTCGAACAGG TGCTGCACGA CTTCAGCCTG GCCGACCGGC TCGACGGCGC CGCCAAGCGC
GACCTGAGCC GCGCCTGGCA CCGCCTGCCC GCGTGGCCCG ACGCGGTGGA GGGGCTCACG
CGCCTCAAGA AGAAATTCAC CATCTGCACG CTCTCCAACG GCAACATCGG CCTTTTGACC
GAAATGGCCA AGCGCGCCGG CCTGCCCTGG GACTGCGTGC TGTCGGCCGA GGTGTTCAAG
GCCTACAAGC CCGATCCGCG CACCTACCTT GGCGTGGCGG GCGTGTTCGA TGCGACGCCG
GGGCAGGTGA TGCTCGCCGC GGCGCACCAC GACGACCTGG CGGCGGCGCG CACCTGCGGC
CTCAAGACCG CCTACATCGA GCGGCCCCAT GAATTCGGCC GCGCCCAGCC GAAGGACGTT
TCGCCGAACC CCGACAACAA CCTGCACGCG CGCGACATCA GGCAGCTGGC CGAGCTGCTC
GGCTGCTGA
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| Protein sequence | MRADFDASDL KVIAFDVFGT VVDWHSGIAA EAERALPGVD GAAFALAWRA GYQPAMKSVM
ERIAAGEGGF TLLDELHLSM LEQVLHDFSL ADRLDGAAKR DLSRAWHRLP AWPDAVEGLT
RLKKKFTICT LSNGNIGLLT EMAKRAGLPW DCVLSAEVFK AYKPDPRTYL GVAGVFDATP
GQVMLAAAHH DDLAAARTCG LKTAYIERPH EFGRAQPKDV SPNPDNNLHA RDIRQLAELL
GC
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