| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3689 |
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| Symbol | |
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| ID | 7973922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3889601 |
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| End bp | 3891337 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794273 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002945571 |
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| Protein GI | 239816661 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTT CCCCCAAGAA AAAACCCGAA GACCTGCGCA GCCAGCAATG GTTCGGCCGC
CACGACCGCG ATGGCTTCAT CTACCGCAGC TGGGTCAAGG GCAAGGGCGT GCCGCACGAC
CAGTTCGACG GGCGCCCGGT CATCGGCATC TGCAACACCT TCAGCGAGCT CACGCCCTGC
AACTCGCACT TCCGCACGCT CGCCGAGCAG GTGAAGATCG GCGTCTACGA AGCGGGCGGC
TTTCCGCTCG AATTCCCGGT GATGTCGCTC GGCGAAACGC TCTTGCGCCC CACCGCCATG
CTGTACCGCA ACCTCGCGAG CATGGACGTG GAAGAAAGCA TCCGCGGCAA TCCGCTGGAC
GGCGTGGTGC TGCTCATGGG CTGCGACAAG ACCACGCCCG CGCTCATGAT GGGTGCGGCC
AGCGTCGACC TGCCGACCAT CGGCGTCTCC GGCGGCCCGA TGCTTTCGGG CAAGTGGCGC
GGCCAGGAAC TGGGCTCGGG CACCGGCGTG TGGCAGATGA GCGAGCAGGT GCGCGCCGGC
ACGCTCAAGC TGCAGGACTT CTTCGAGGCC GAGAGCTGCA TGCACCGCAG CCACGGCCAC
TGCATGACCA TGGGCACCGC CAGCACCATG GCCAGCATGG TCGAGTCGCT GGGCATCGGC
CTGCCCGGCA ACGCCGCCTA CCCGGCGGTG GACGGCCGGC GCAACGTGCT CGCGCGCATG
GCGGGGCGGC GCATCGTCGA CATGGTCCAT GAAGACCTCC ACATGTCGAA GATCCTCACG
CGCCAGGCCA TCGAGAACGC CATCAAGGTC AACGCCGCCA TCGGCGGCTC CACCAACCTC
GTCATCCACC TGCTGGCCAT TGCGGGGCGC ATCGGCGTCG ATCTTTCGCT GGACGACTTC
GACCGCCTGG CCTCGGACCT CCCCTGCCTG GTCGACCTGC AGCCTTCGGG CCGCTTCCTG
ATGGAAGACT TCTGCTATGC GGGCGGGCTG CCGGTGGTCA TCAAGGAGAT CGCGCAGTAC
CTGCACAAGG ATGTGATCAC GGCCAACGGC CAGACACTGT GGGACAACGT GAAGGACGCC
GAGAACTACA ACCCGCAGGT GATCCGCCCG CTGGCCGAGC CCTTCAAGGA CAAGGCCGGC
ATCTGCGTGC TGCGCGGCAA TCTCGCGCCC AACGGCGCCA TCATCAAGCC CAGTGCCGCC
ACGCCCGAGC TGCTGGTGCA CAAGGGCCGC GCGGTGGTGT TCGAAAGCGC CGACGACCTG
CACAAGCGCA TCGACGACGA GAACCTCGAC ATCGACGAGC ACTGCGTGAT GGTGCTGAAG
AACTGCGGCC CGCGCGGCTA TCCGGGCATG GCCGAGTCGG GCAACATGCC GCTGCCGCCG
AAAGTGCTGC GCAAGGGCAT CACCGACATG GTCCGCATCA GCGACGCGCG CATGAGCGGC
ACGGCCTACG GCACGGTGGT GCTGCACACG GCGCCCGAGG CGGCCGCGGG CGGACCGCTC
GCGCTGGTGC AGGACGGCGA CATCGTCGAG CTGGACGTGC CCAACCGCAA ACTGCACCTG
CACGTGAGCG ACGAAGAGCT CGCCAGGCGG CTCGAGAAGT GGGTCGCGCC CAAGGCGCCG
CTCGATTCGG GTTACTGGAA GCTGTACGTC GACACGGTGC TGCAAGCCGA CCAGGGCGCC
GACCTGGCCT TCCTGCGTGG TCGCCGCGGG GCCTTCGTGC CGCGCGACAA TCACTGA
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| Protein sequence | MSTSPKKKPE DLRSQQWFGR HDRDGFIYRS WVKGKGVPHD QFDGRPVIGI CNTFSELTPC
NSHFRTLAEQ VKIGVYEAGG FPLEFPVMSL GETLLRPTAM LYRNLASMDV EESIRGNPLD
GVVLLMGCDK TTPALMMGAA SVDLPTIGVS GGPMLSGKWR GQELGSGTGV WQMSEQVRAG
TLKLQDFFEA ESCMHRSHGH CMTMGTASTM ASMVESLGIG LPGNAAYPAV DGRRNVLARM
AGRRIVDMVH EDLHMSKILT RQAIENAIKV NAAIGGSTNL VIHLLAIAGR IGVDLSLDDF
DRLASDLPCL VDLQPSGRFL MEDFCYAGGL PVVIKEIAQY LHKDVITANG QTLWDNVKDA
ENYNPQVIRP LAEPFKDKAG ICVLRGNLAP NGAIIKPSAA TPELLVHKGR AVVFESADDL
HKRIDDENLD IDEHCVMVLK NCGPRGYPGM AESGNMPLPP KVLRKGITDM VRISDARMSG
TAYGTVVLHT APEAAAGGPL ALVQDGDIVE LDVPNRKLHL HVSDEELARR LEKWVAPKAP
LDSGYWKLYV DTVLQADQGA DLAFLRGRRG AFVPRDNH
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