| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3688 |
|---|
| Symbol | |
|---|
| ID | 7973921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3888703 |
|---|
| End bp | 3889449 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794272 |
|---|
| Product | GntR domain protein |
|---|
| Protein accession | YP_002945570 |
|---|
| Protein GI | 239816660 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA ACATCCACGG TCGCACGCTC GAGCTGCTCG GCGAAGCTGT CGTGGCCGGC
CGCTATGCGA TCGGTGCGTC GATCCCGGCC GAACCCATTC TGGGCGAGGA GCTCGGCGTG
AGCCGCACCG TGGTGCGCGA AGCCATCAAG TCGCTCGCGG CCAAGGGCCT GATCGTGACG
GGCCCCAAGG TGGGCACGCG GGTGCTGCCG CAGGACAAGT GGAACTGGTT CGACCCTGAC
GTCATCACCT GGCAGTCGCG TGCCGGGCTC ACGCCCGAGT TCCTGCGCGA CCTGCAGGAC
CTGCGGCGCG TGGTCGAGCC GGCGGCCGTG CGGCTCGCGG CCGAGCGCGC CAGCCCGCAG
GACATCGAGG AAATAGAGCG TGCCTACGCC GGCATGAAGG AAGCCGTGGA GAACGGCGGC
GACTACGTCA CCTTCGACCT GCGCTTTCAT ACCGGCCTCC TGAGCGCAGC GCGCAACCGC
ATGCTCGCGC AGATGAGCAA GGCGCTCAAC GCACTGCTTC GCACCAGTTT CGAGATATCG
ACCAGCAAGC CCGACGGTCC CGCGCTTTCG CTGCCGCTGC ATCGCGCGGT GCTCGACGCG
GTGATTGCGC ACGATCCGGC CAAGGCCGAG CAGGCGGTCA TCCGCCTCAT CGACGGCGCG
CGGCAGGACA TCGAAGACGT GCTCGGCTCG TCGCGCCGCC GGCTGCCGCG GCTCAGCCGC
CCACCGCCGC GGCTCAAGGC CCACTAG
|
|---|
| Protein sequence | MIKNIHGRTL ELLGEAVVAG RYAIGASIPA EPILGEELGV SRTVVREAIK SLAAKGLIVT
GPKVGTRVLP QDKWNWFDPD VITWQSRAGL TPEFLRDLQD LRRVVEPAAV RLAAERASPQ
DIEEIERAYA GMKEAVENGG DYVTFDLRFH TGLLSAARNR MLAQMSKALN ALLRTSFEIS
TSKPDGPALS LPLHRAVLDA VIAHDPAKAE QAVIRLIDGA RQDIEDVLGS SRRRLPRLSR
PPPRLKAH
|
|---|
| |