| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3687 |
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| Symbol | |
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| ID | 7973920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3887216 |
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| End bp | 3888601 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644794271 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002945569 |
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| Protein GI | 239816659 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCG TCAAGTCGCT GATAGCGCCG ACGTTGTTCG CGCTGGGGTT GTTGGCGTCG
GCAGGTCCCG CCGCCGCGCA GGAAAAGCTC ACCGTCTGGT GGGTCAAGGG CTTCTACAAG
GCCGAGGACG ATGCGTTGTT TGCGGCCATC AAGAAGTTCG AGGACAAGAA CAAGGACGTG
AAGATCGAGC TGTCGCAGTA CCCGATCCAG GACATGATTC CCAAGACCGT GTCCGCGCTC
GACTCCGGCA GCCCGCCCGA CGTGGCGTAT GCCGACGTGT ACGACTTCCA GGTCACGGGC
AAGTGGGCCT ACGACGGCAA GCTCGAGGAC ATCGGCAGCG TGCTCGCGCC CATGAAGGAC
CGCTTCGCGC CCAACACGCT CGAGACCGCC TTCCTCTACA ACGACCAGAC CAAGAAGAAG
GCCTACTACG CGTTCCCGAT CAAGCAGCAG ACGATGCATA TCGAGTACTG GAACGACATG
CTCAACGAGG CCGGGTTCAA GGAGTCCGAC ATCCCCACCG CCTGGAAGGA CTACTGGTCG
TTCTGGTGCG AGAAGGTGCA GTCCGGCAGC CGCAAGCAGA CCGGCAAGCG CACCTTCGGC
ATCGGCATGC CGATGGGCGT GGATTCGAGC GATTCCTTCT ATTCGTTCCT GACCTTCATG
GACGCCTACA ACGTCAAGCT GGTGGCCGAC AGCGGCAAGC TGCTGGTGGA CGACCCCAAG
GTGCGCGCCG GCCTGATCAG CGCCTTGACC GACTACACCA CGCCCTACAC GAAGGGCTGC
ACGCCGCCCT CGTCGACCAG CTGGAAGGAC CCGGACAACA ACGTCGCCTT CCACAACAAG
ACGACCGTGA TGACGCACAA CGCGACCATC TCCATTGCCG CCAAGTGGCT CGACGATTCG
AACAACGCCT CGCTCACGCC CGAGCAGCGC GAGGAAGCGC GCAAGAACTA CACCGAGCGC
ATCCACACGG CGGGCTTTCC GAACAAGCCT GACGGCAGCA AGATGGTCTA CCGCTCCGCG
GTGAAGACCG GCGTGGTGTT CAAGGACGCC AAAAACAAGG CGCGCGCCAA GGAGTTCGTT
GCCTTCCTCA TGCAGGAAGA GAACCTCACG CCGTACGTCG AGGGTTCGCT CGGCCGCTGG
TTCCCGGTGA CCAAGGCCGC GCAGGCGAGC CCGTTCTGGA AGGCCGACCG CCATCGCCTG
TCGGTGTTCA ACCAGTACGC CGCCGGCACC GTGACCTTCG AGTTCACCAA GAACTACAAG
TTCACCGTGC TCAACAACGA GAACGTCTGG GCCAAGGCCA TGAGCCGCGT CGTCACCGAC
AAGGTGCCGG TGGACAAGGC GGTCGACGAG CTGATCGCGC GCATCAAGAC GGTCGCGGCG
CAGTAA
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| Protein sequence | MKVVKSLIAP TLFALGLLAS AGPAAAQEKL TVWWVKGFYK AEDDALFAAI KKFEDKNKDV
KIELSQYPIQ DMIPKTVSAL DSGSPPDVAY ADVYDFQVTG KWAYDGKLED IGSVLAPMKD
RFAPNTLETA FLYNDQTKKK AYYAFPIKQQ TMHIEYWNDM LNEAGFKESD IPTAWKDYWS
FWCEKVQSGS RKQTGKRTFG IGMPMGVDSS DSFYSFLTFM DAYNVKLVAD SGKLLVDDPK
VRAGLISALT DYTTPYTKGC TPPSSTSWKD PDNNVAFHNK TTVMTHNATI SIAAKWLDDS
NNASLTPEQR EEARKNYTER IHTAGFPNKP DGSKMVYRSA VKTGVVFKDA KNKARAKEFV
AFLMQEENLT PYVEGSLGRW FPVTKAAQAS PFWKADRHRL SVFNQYAAGT VTFEFTKNYK
FTVLNNENVW AKAMSRVVTD KVPVDKAVDE LIARIKTVAA Q
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