| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3682 |
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| Symbol | |
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| ID | 7973915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3881298 |
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| End bp | 3883103 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794266 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_002945564 |
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| Protein GI | 239816654 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTG ACGAACTGAA GCTGGCTCCC GCCATCTTGA AGGCTGTGCA CGAGCACGGT
TACGACACCC CCACCCCCAT CCAGGCGCAA GCCATTCCCG CGGTCCTCGA AGGCCACGAC
CTGCTGGGCG GCGCCCAGAC CGGCACCGGC AAGACCGCTG CCTTCACGCT GCCCATGCTG
CACAAGCTCA GCACGGGCGC GAGCGCCACC AACAAGTTCG GCGGCATCGG CATCCGTGCG
CTGGTGCTCA CGCCCACGCG CGAACTCGCG GCCCAGGTCG AAGAGTCGGT GCGCACCTAC
GGCAAGTACC TGGAGCTCGA CTCCACCGTG ATCTTCGGCG GCGTGGGCAT GAACCCGCAG
ATCAGCAAGC TCAAGAAGGG CGTCGACATC CTCGTGGCCA CCCCCGGCCG CCTGCTCGAC
CTGCAGCAGC AGGGCATGCT CGACCTGAGC CAGGTCCAGA TGCTGATCCT CGACGAAGCC
GACCGCATGC TCGACATGGG CTTCATCCAT GACGTGAAGA AGATCCTGGC GCTGGTGCCC
AAGGAAAAGC AGAGCCTGCT GTTCTCGGCC ACCTTCAGCG ACGAGATCCG CGACCTGGCC
GCCACGCTGC TCAAGAACCC GCAGAGCATC CAGGTGACGC CGCGCAACAC CACCGTGCAG
CGCATCACGC AGGTGATCCA CCCGGTGGGC CGCGGCAAGA AGAAGGCGCT GCTCGCGCAC
ATCATCAACG AGAACAAGTG GAGCCAGGTG CTCGTGTTCA CGCGCACCAA GTTCGGCGCC
AACAGCGTGG CCGAATTCCT CACCAAGAAC GGCATCGAGG CGATGGCGCT GCACGGCAAC
AAGAGCCAGA GCGCCCGCAC CCAGGCGCTG GCCGGCTTCA AGAGCGGCGA CATCCGCGCG
CTGGTGGCCA CCGACATCGC GGCCCGCGGC ATCGACATCG ACGAGCTGCC GCACGTCGTG
AACTACGAGA TCCCGAACGT CAGCGAAGAC TACGTGCACC GCATCGGCCG CACCGGCCGC
GCCGGTTCGA GCGGCGAGGC CGTGAGCTTC GTCTGCATGG ACGAAGAAGG CTTCATGCAG
GAAATCGAAC GCTTCACCAA GCAGACGATC CCTGTGCAGT TCGTCGAAGG CTTCGGCCCC
GAGGAAGGCG AACGCGCCGA GCCGATCGCC ATGGGTCGCC AGACGATCTG GGGCGGCGCC
GGCCGTCCGC CGAGCCGCGA CGTGATGCAG GCGGCCGCCA AGGCTGCCCG CACCGAGATG
CTGCAGCGCA TCCGCGAGAA CAAGGCCGGC CAAGGCGGCG GCGAGCGCGC CGGCGGTGGT
GGCGGCGGCA ACGGCGGCGG CCAACGCCGC GGTGGCGGCC AGGGCGGTGG CGGCCAGGGC
CGCAATGCCA ATGGCGGCGG CCAGGGGCAA GGCCAGGGCC CGCGCGGCCA GGGCGCCCGC
CCGGCACAAG GCCGCGGACC GCAAGGCCCG GCACGCGCAC CGCACCATGC GCCGCAGAAC
CATCTGCCGC ATGACGAGCG CCAACCGCGC CATCACGGCA ACAGCCACAG CCCGACCCAG
GCCAACCAGG TCGCGCACCT GCGCGCCGAA GCGGTCGCCG GCGGCGACGG CCAGCCGGAT
CCGCTGCGCA CCAGCGTCGA CCACATGGGT GGCGGCCGCG GTCGCGGACG TCCGGGCGGC
GGTGGCGGCG GCTACGGCGG CAACCGTTCG GGCGGCGGTG GCCGTTCGGG TGGTGGCGGC
GGCTACGGCG GCGGTGGCGG CGGCAACCGC TCCGGCGGCG GCGGCGGCCG TTCGTTCGGC
CGCTGA
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| Protein sequence | MNFDELKLAP AILKAVHEHG YDTPTPIQAQ AIPAVLEGHD LLGGAQTGTG KTAAFTLPML
HKLSTGASAT NKFGGIGIRA LVLTPTRELA AQVEESVRTY GKYLELDSTV IFGGVGMNPQ
ISKLKKGVDI LVATPGRLLD LQQQGMLDLS QVQMLILDEA DRMLDMGFIH DVKKILALVP
KEKQSLLFSA TFSDEIRDLA ATLLKNPQSI QVTPRNTTVQ RITQVIHPVG RGKKKALLAH
IINENKWSQV LVFTRTKFGA NSVAEFLTKN GIEAMALHGN KSQSARTQAL AGFKSGDIRA
LVATDIAARG IDIDELPHVV NYEIPNVSED YVHRIGRTGR AGSSGEAVSF VCMDEEGFMQ
EIERFTKQTI PVQFVEGFGP EEGERAEPIA MGRQTIWGGA GRPPSRDVMQ AAAKAARTEM
LQRIRENKAG QGGGERAGGG GGGNGGGQRR GGGQGGGGQG RNANGGGQGQ GQGPRGQGAR
PAQGRGPQGP ARAPHHAPQN HLPHDERQPR HHGNSHSPTQ ANQVAHLRAE AVAGGDGQPD
PLRTSVDHMG GGRGRGRPGG GGGGYGGNRS GGGGRSGGGG GYGGGGGGNR SGGGGGRSFG
R
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