| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3669 |
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| Symbol | |
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| ID | 7973902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3869741 |
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| End bp | 3870394 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794254 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945552 |
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| Protein GI | 239816642 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.101493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCGATT TTTCTCTCTG GGACATCCTG CGCAACCTGC TGATGGCGCT GCGCTGGACC
GTCGTGCTCT CGCTCATCGC CTTCATCGGC GGCGGGCTGG TGGGCGCGCT GCTGCTGTTC
CTGCGGCTGC GCGGCGGCAG CGCCATGGGC CGCGCCGTCG GCCTCTACGT GCAGCTGTTC
CAGGGCACAC CGCTGCTGAT GCAGCTGTTC CTCGCCTACT TCGGCATTGC GCTGTTCGGC
ATCGACGTGT CGGCGTGGAC CGCGGCCAGC GTGGCGCTCA CGCTCTACAC CAGCGCCTTC
CTCACCGAGA TCTGGCGCGG CTGCGTGGCC GCCATTCCCA AGGGCCAGTG GGAAGCCTCG
GGCAGCCTGG CGCTGAGCTT CAGCGAGCAG ATGCGCCACG TGATCCTGCC GCAGGCGGTG
AAGATCGCGA TCGCGCCGAC GGTGGGTTTC CTGGTGCAGG TGATCAAGGG CACGGCGCTC
GCCTCGGTGA TCGGTTTTGT CGAGCTCACC AAGGCCGGCA GCATGATTTC GAACGCCACC
TTCCAGCCCT TCGTGGTGTT CAGCTGCGTG GCGCTGCTTT ATTTCGTGCT GTGCTTCCCG
GTAAGCCTGT ACGCCAAGAA TCTCGAGAGG AAATCCCATG GCCGCCGTGC TTGA
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| Protein sequence | MVDFSLWDIL RNLLMALRWT VVLSLIAFIG GGLVGALLLF LRLRGGSAMG RAVGLYVQLF
QGTPLLMQLF LAYFGIALFG IDVSAWTAAS VALTLYTSAF LTEIWRGCVA AIPKGQWEAS
GSLALSFSEQ MRHVILPQAV KIAIAPTVGF LVQVIKGTAL ASVIGFVELT KAGSMISNAT
FQPFVVFSCV ALLYFVLCFP VSLYAKNLER KSHGRRA
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