Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3666 |
Symbol | |
ID | 7973899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3867451 |
End bp | 3868233 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644794251 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_002945549 |
Protein GI | 239816639 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.216999 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACAT CCGCATCCGA AATCAGTGCA CGCATCGTCG AGGCGGTGAT GGCGCAGAAG CTCGCGCCGG GCTCGCGCCT GGGCGAGCAG CCGCTGGCCA TGCTGTTCGA CTGCAGCCGC ACCATCGTGC GCGAGGCGCT CACCCGGCTG GCGGCGCGCG GCATCGTCAC GGTGAGTGCG CGGCGCGGCT GGTTCGTGAT CGAGCCCTCG CAGGACGAGG CGCGCGAAGC CTTCGAGGCC CGGCGTGTCA TCGAGCTCGG CCTCATCCGC AGCACGGGCA GCACCGGCAA GATCGACAAG GCCGCGCTGC GCCAGCTGAA GGCGCACCTG CAGCGTGAAA AGGCCGCACT GAAAGAGAGC GACGTCGGCA ACCGCAGCTT CCTGCTCGGC GACTTCCACG TGTGCCTGGC CGAATGCCTG GGCAACACGC TCTTGGCCGA CACGCTGCGC GACTTCACCG CGCGCACCAC GTTGATCGCC ATGCTCTACC AGTCCACGCA CGATGCCGTG CAGTCCTGCG AGGACCATGT GCAGATCGTC GCCGCCCTCG AGCGGGGCGA CCACGCCGCC GCCGAGGCGC TGATGGCCGC GCACATCGGC ACGGTGCAGT CGGCGCTGCG CGTGCAGGCG CCGACCGATC CGCTCGCGCA GTTGCGCGAT GCGCTGGCGC CGCTGCAGCA GAAGAACAAG AAAACCGCCG CGGCCGTTCC CCGGCGGCGC AAGGCCGCCG CGCCCTCCCC CGACGACACC GATTCATCGA CTTACCTAGG AGCCCTGCTA TGA
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Protein sequence | MSTSASEISA RIVEAVMAQK LAPGSRLGEQ PLAMLFDCSR TIVREALTRL AARGIVTVSA RRGWFVIEPS QDEAREAFEA RRVIELGLIR STGSTGKIDK AALRQLKAHL QREKAALKES DVGNRSFLLG DFHVCLAECL GNTLLADTLR DFTARTTLIA MLYQSTHDAV QSCEDHVQIV AALERGDHAA AEALMAAHIG TVQSALRVQA PTDPLAQLRD ALAPLQQKNK KTAAAVPRRR KAAAPSPDDT DSSTYLGALL
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