| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3654 |
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| Symbol | |
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| ID | 7973887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3855425 |
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| End bp | 3856102 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794239 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002945537 |
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| Protein GI | 239816627 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.599678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGACA TCGACCTCAT CCACGAAGAC GCCCACCTGC TGGTGCTGAA CAAGCCCGCC
GGCCTGCTCT GCGTGCCCGG GCGCGGCGAA GACAAGCAGG ACTGCCTGAG CGCGCGCGCC
ATGCGGCGCT GGCCCGATGC GCTCATCGTG CACCGGCTCG ACATGGCGAC CAGCGGGCTG
GTGCTGATGG CGCGCGGCGC CGCCATGCAG CGTGCGCTCG GCGACGCCTT TGCCGAGCGC
CGCGTGCACA AGCGCTACGA GGCCATCGTG GACGGTGCGA TGCCGGTGCA GGACGAATGG
TCGGTCATCG ACGCGCCGCT CATGGCCGAC TGGCCCAACC GCCCGCTGCA GAAGGTGGAC
CCGGCCGGCA AGCCCAGCCT CACGCGCTGG CGTGCGCTGT CTTCTTCGTC TTCAGCGCCG
GATGGGAATA CACAGGCCTC GCACCTGCTG CTGGAGCCGC TCACGGGGCG CTCGCATCAG
TTGCGCGTGC ACCTGCTGTC GATCGGCCAT TCGATTCTGG GAGACGCGCT CTACGGCAGC
GCCGATGTCC AGGCACGTGC GCCGCGCCTG CTGCTGCATG CCAGCGAACT GGGCTTCGTG
CACCCGGTCA CGCAGCAGAG CCTTTGCCTG CAGAGCCCGT CCGGCTTCGA TTTCTCTCGC
CTTACAGCCC GCCCTTGA
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| Protein sequence | MPDIDLIHED AHLLVLNKPA GLLCVPGRGE DKQDCLSARA MRRWPDALIV HRLDMATSGL
VLMARGAAMQ RALGDAFAER RVHKRYEAIV DGAMPVQDEW SVIDAPLMAD WPNRPLQKVD
PAGKPSLTRW RALSSSSSAP DGNTQASHLL LEPLTGRSHQ LRVHLLSIGH SILGDALYGS
ADVQARAPRL LLHASELGFV HPVTQQSLCL QSPSGFDFSR LTARP
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