| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3635 |
|---|
| Symbol | |
|---|
| ID | 7970710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3841798 |
|---|
| End bp | 3842721 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794220 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002945518 |
|---|
| Protein GI | 239816608 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA GCACCATCGA CTTCAAGGGC CGAGTGGCCA TCGTGACCGG CGCGGGCGGC
GGCCTGGGCC GCCAGCATGC GCTGGCCCTG GCGGCGCGCG GCGCCAGGGT GGTGGTCAAC
GACCTGGGCG GCGCCCGCGA CGGCTCCGGC GGCTCGGTGA GCGCGGCGCA GGCCGTGGTC
GACGAAATCG AGGCCGCGGG TGGCGAGGCG ATGGCCAACG GCGCCTCCGT CACCGATTTC
GAGGCGGTGC AGGCCATGGT GAAGCAGGCG GTCGACGCCT GGGGCCGGGT CGACATCCTG
GTCAACAACG CCGGCATCCT GCGCGACAAG AGCTTTGCCA AGATGGAGCT TGCCGATTTC
AAGCTGGTGG TCGACGTGCA CCTGATGGGC GCGGTGAACT GCACCAAGGC CGTCTGGGCG
CTCATGAACG AGCAGAAATA CGGCCGCATC GTCATGACCA CCTCGTCTTC CGGCCTCTAC
GGCAACTTCG GCCAGAGCAA CTACGGCGCG GCCAAGCTTG CGCTGGTGGG GCTGATGCAG
ACGCTGAGCA TCGAAGGCGC AAAGAACGAC ATCCGCGTCA ATTGCCTGGC GCCGACCGCG
GCCACCCGCA TGACCGAGGG GCTGATGCCG CAGGAAGTGC TGGACGCGCT CAAGCCCGAG
GCCGTGGTGC CCGCCATGCT GGTGCTGGCG GCCGAGAACG CGCCGAACCG CACCATTCTC
TGCGCCGGCG CCGGCACCTT CGAGGCCGCC CACATCACGC TGACGCAGGG CGCCTGGCTC
GGCATCGGCG CGGACACGCC CGAGCAGCTG GCTGCGCGGC TCGCCGAAGT GACTTCGCGC
GAGGGCGAGA TCGTGCCGCA GAGCGGCTCG GCCCAGGGCA GCAACGAGGT CGGCAAGGCG
ATGGCGAACG CCCGCAAGGG CTGA
|
|---|
| Protein sequence | MSNSTIDFKG RVAIVTGAGG GLGRQHALAL AARGARVVVN DLGGARDGSG GSVSAAQAVV
DEIEAAGGEA MANGASVTDF EAVQAMVKQA VDAWGRVDIL VNNAGILRDK SFAKMELADF
KLVVDVHLMG AVNCTKAVWA LMNEQKYGRI VMTTSSSGLY GNFGQSNYGA AKLALVGLMQ
TLSIEGAKND IRVNCLAPTA ATRMTEGLMP QEVLDALKPE AVVPAMLVLA AENAPNRTIL
CAGAGTFEAA HITLTQGAWL GIGADTPEQL AARLAEVTSR EGEIVPQSGS AQGSNEVGKA
MANARKG
|
|---|
| |