| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3619 |
|---|
| Symbol | |
|---|
| ID | 7970694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3828402 |
|---|
| End bp | 3829337 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794204 |
|---|
| Product | Succinylglutamate desuccinylase/aspartoacylase |
|---|
| Protein accession | YP_002945502 |
|---|
| Protein GI | 239816592 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3608] Predicted deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG CTCCCCCCGC CCTCGAAGTC CTCCCGCGCG ATCTCTCCGC CTACCGCAAG
GGCAACGTCG GCATCGACTA TGTGCACCGC TTCGAGTCCG GCAAGCCGGG GCCCCACGTG
CTGATCAACG CGCTCACGCA CGGCAATGAA ATCTGCGGCA TGACCGCCGC CACGCACCTG
CTCGACACCC AGGTGCGCCC CAAGATCGGC ACGCTCACCG TGAGCTTTGC CAACGTGGAA
GCCTACGAGT CCTTCGACCA GGCGCTGCCC TTCGACAGCC GCCAGCTGGT GCACAACCTC
AACCGCATCT GGTCGCCCGA ATGGCTCGAC GGCACCGAGG ACAGCCCCGA GCTGCGCCGC
GCCCGCGCGC TGCGGCCGGT GGTGAGCGCG GCCGACCACA TCCTGGACAT CCACTCCACC
AGCCAGCCGG TGATTCCGTT CTGGGTGTAT CCCGCCTTCG AGCGCAACGC CGAGGCGGCG
CTGGCCATCG GCCGTCCGTC GGTGCACCTG GTGATGCCCG ACGGCCTGGG CTCCGGCACG
CCGCTGATCC AGCATGGCCG CCATGGCCTG CCCGATGGCA AGGGCGTGGC ACTGGTCGCC
GAATGCGGCC AGCACTTCCT GCGCTCGGCC TCCGAGCTGG CCACCGCCAT CTCGCTCGAC
TTTTTGGCGC ACTTCGGCCT CATCGACAAG GACCCCGCCG CGCCGGCGCC CGGCCCGCAG
CGCCGCTTCG AGCTGCTGCA GACGCACGTC ATCAGGTCGG AAGACTTCGC GTTCGTGCGC
CCGCTGATCG GCTTCGAGAC CTTTGACAAG GGCGAGCTGA TCGCCACCAA CGGCCCGGAC
GAGATCCGCG CGCCCTGCGA CGAGTGCACG ATCTTCATGC CCGCGCAGCG GGTGATCGTG
GGGCGCGAGG CGGTTTATTT GACGAAGCCG ATCTGA
|
|---|
| Protein sequence | MTQAPPALEV LPRDLSAYRK GNVGIDYVHR FESGKPGPHV LINALTHGNE ICGMTAATHL
LDTQVRPKIG TLTVSFANVE AYESFDQALP FDSRQLVHNL NRIWSPEWLD GTEDSPELRR
ARALRPVVSA ADHILDIHST SQPVIPFWVY PAFERNAEAA LAIGRPSVHL VMPDGLGSGT
PLIQHGRHGL PDGKGVALVA ECGQHFLRSA SELATAISLD FLAHFGLIDK DPAAPAPGPQ
RRFELLQTHV IRSEDFAFVR PLIGFETFDK GELIATNGPD EIRAPCDECT IFMPAQRVIV
GREAVYLTKP I
|
|---|
| |